Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0540 ATGACCACCAAGCCCAAGGGCAATGCCTTGCAGGGCTTGAAGCCCGTGATTCTTATGGTCATAGTTCAGATTGCATTCGCCGGTGTCAACATCCTCTACAAGCTCGCCGTTAATGATGGCATGAGCCTCAGAGTCACTGTCGCCTACCGCTTCATTTTCGCTACTGCTTTCATTGCTCCCTTTGCTCTCTTTTTCGAAAGGAAGAAGAGGGTGAAACTGACATGGATGGTACTATTTCAATCATTTCTATGCGGCTTATTTGGAGGAGCCTTAGCTCAGAATTTCTACCTGGAGGCTCTGGCTTTAACTTCTGCAACGTTTGCATCCGCCATGGCCAACCTCATACCTGCTATTACCTTTGTGATGGCCGTTTGCATAGGTTTGGAAAGATTGAATTTGGGATCAGCAGCAGGGAAGGCGAAAATAATCGGAACAATGGCCGGAATTGCAGGAGCAATGGTTCTGACTTTCGTGAAAGGCCCGGAAATCCAGATTGCATCGCATGTTAACCTTATGAATCACAGAAACAATAGTTCTATGGCGGCTCATGGCGGCGGTGGTAGGACGGTGTTGGGATCTGTGTGCGCGTTGGCGAGCGGGATCTCTTACGCACTGTGGCTCATCATACAGACAAAGATGAGTGAGAGGTATCCAAGCTATTACTCCAGCACTGCGCTCATGTCTCTCTGGGCGGCGATCTTGTCCACGGCGTTCGCTCTTTCCGTCGAGAACGATTGGAGTCAGTGGAGGCTTGGTTGGAACATTAGGCTTCTGACGGTTGCTTATTCCGGCATGGTTGTTTCTGGAATGATGGTGGCTGTGATCTCCTGGTGCGTCCGCAAGAGAGGGCCCTTGTTCGCCTCTGTTTTCAGCCCTCTCTTGCTCGTCATTGTCGCCGTGGCTAGCTCCACCGTCTTGAACGAGAAGCTGTACCTTGGAAGCTTCATCGGAGCGGTGTTGATTGTGTGTGGGTTATACGCTGTTCTTTGGGGGAAAAGCAGAGAGAGGAAGAAGATGAAGAATATGAGTCAATTACCACAATGCCCTCATGACGATGATGATGACACTCTACAAGTAATTGTGACCAGGTCTAATTCTAAAGTAGGAGAAGATCGTAAAAGCAACAACAATGGACACGTGGACGATAACCAAGGTTCAATAGATCATGGTAATAATAATAAGGGAATAACAAGAGATCAAGAACAAGAAGAAGAAAAACAAAATGATGAAGAGGGAATTTCTCCCAATGCAGAAGACATTATCCCTAGTGTAGTAATATAA 1281 0.4738 MTTKPKGNALQGLKPVILMVIVQIAFAGVNILYKLAVNDGMSLRVTVAYRFIFATAFIAPFALFFERKKRVKLTWMVLFQSFLCGLFGGALAQNFYLEALALTSATFASAMANLIPAITFVMAVCIGLERLNLGSAAGKAKIIGTMAGIAGAMVLTFVKGPEIQIASHVNLMNHRNNSSMAAHGGGGRTVLGSVCALASGISYALWLIIQTKMSERYPSYYSSTALMSLWAAILSTAFALSVENDWSQWRLGWNIRLLTVAYSGMVVSGMMVAVISWCVRKRGPLFASVFSPLLLVIVAVASSTVLNEKLYLGSFIGAVLIVCGLYAVLWGKSRERKKMKNMSQLPQCPHDDDDDTLQVIVTRSNSKVGEDRKSNNNGHVDDNQGSIDHGNNNKGITRDQEQEEEKQNDEEGISPNAEDIIPSVVI* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0540 426 PANTHER WAT1-RELATED PROTEIN 14 366 IPR030184 GO:0016021|GO:0022857
Amo20g0540 426 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 156 - -
Amo20g0540 426 MobiDBLite consensus disorder prediction 379 393 - -
Amo20g0540 426 Pfam EamA-like transporter family 14 156 IPR000620 GO:0016020|GO:0016021
Amo20g0540 426 Pfam EamA-like transporter family 192 329 IPR000620 GO:0016020|GO:0016021
Amo20g0540 426 MobiDBLite consensus disorder prediction 364 426 - -
Amo20g0540 426 MobiDBLite consensus disorder prediction 394 413 - -
Amo20g0540 426 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 335 - -
Amo20g0540 426 PANTHER WAT1-RELATED PROTEIN 14 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0540 Amo-Chr20 6798094 6800524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0540 13 344 Nodulin-like Gene Family AT1G25270 44.179 2.64e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0540 - - aip:107620100 795.038