Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0536 ATGGTTGGAAGTGGCCATTTGGGCGCCAACGGAACAGTTGAACCATTGCCCGAGGATTTTGATGCGTCAGCTGTGATCAAAGAACCTGTGCCACCCACAGTTGCAGAAAGTGAGAACGTGAAAAGAGCTATTGTACTGGGAAAAAATGTTCACACACTGTGTCTAGAAGTTACAGAACCTGATGCAGATGATGAGATTACTGGGGAAAGGGATGCTTACATGGCAAGTGTATTGTCCAAATACAAAAAATCATTGACTGAAAGGACAAAACATCATTTAGGTTACCCCTATAATTTGGATTTCGACTACGGTGCACTCTCTCAACTTCAGCACTTCTCCATAAACAACCTGGGAGATCCATTCATTGAAAGCAATTATGGAGTCCACTCCCGGCAGTTTGAAGTTGGTGTTTTGGACTGGTTTGCCCGGTTATGGGAAATAGAGAAAGATGAGTACTGGGGCTATATGACAAACTGTGGTACTGAGGGCAATCTCCATGGCATCCTAGTTGGGAGAGAGGTCCTTCCGGATGGGATTTTGTACGCCTCACAAGAATCACATTATTCTGTATTTAAAGCTGCACGTATGTACAGAATGGATTGTGTGAAGATTGCAACTCTTCATACCGGAGAGATTGATTGTAATGATTTTAAGGCCAAGCTGCTTCTTCACAAAGATAAGCCAGCTATTGTAAATGTGAACATAGGTACAACTGTCAAAGGAGCAGTGGATGATCTTGATCTGGTGATAAAGACACTTGAAGATATTGGATTTTCACGTGACAAATTCTACATCCATTGTGATGGGGCCTTGTTTGGTCTCATGATGCCTTTTGTGAAACTTGCACCAAAAGTTTCTTTTAAGAAGCCCATTGGTAGTGTTAGTGTTTCTGGCCACAAATTTGTGGGGTGCCCAATGCCTTGTGGTGTTCAGATAACAAGATTGGAGCATATCAATGTTCTTTCCAATAATGTAGAATACCTTGCTTCTAGGGATGCCACAATCATGGGTAGCCGGAATGGCCATGCTCCCATATTCCTTTGGTATACGCTTAACCGGAAAGGATACAGAGGTTTCCAGAAAGAAGTGCAGAAATGCCTGAGGAATGCACACTACTTCAAGGACCGCCTTAGGGAGGCCGGAGTTGGTGCAATGCTTAATGAGCTGAGCAGCACAGTTGTGTTTGAGAGGCCACATGATGAGGAGTTTGTACGGAAGTGGCAGTTGGCATGCCAGGGAAACATAGCACATGTGGTGGTGATGCCAAATGTCACTAAGGGTAAGCTTGATGATTTTCTGAACGAGCTTGTGGAGAAGCGCGCTCAATGGTTCAAAGATGGCAAGTTTCAACAATATTGCATTGCCTCAGAAGTGGGTGAAACCTGTTGTCTTTGCCCTTTGCACAAGGGCAAGTGA 1416 0.4414 MVGSGHLGANGTVEPLPEDFDASAVIKEPVPPTVAESENVKRAIVLGKNVHTLCLEVTEPDADDEITGERDAYMASVLSKYKKSLTERTKHHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKDEYWGYMTNCGTEGNLHGILVGREVLPDGILYASQESHYSVFKAARMYRMDCVKIATLHTGEIDCNDFKAKLLLHKDKPAIVNVNIGTTVKGAVDDLDLVIKTLEDIGFSRDKFYIHCDGALFGLMMPFVKLAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINVLSNNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYFKDRLREAGVGAMLNELSSTVVFERPHDEEFVRKWQLACQGNIAHVVVMPNVTKGKLDDFLNELVEKRAQWFKDGKFQQYCIASEVGETCCLCPLHKGK* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0536 471 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 293 314 IPR021115 GO:0016831
Amo20g0536 471 Gene3D Aspartate Aminotransferase, domain 1 352 440 IPR015422 GO:0003824
Amo20g0536 471 Gene3D - 107 351 IPR015421 GO:0003824
Amo20g0536 471 PANTHER SERINE DECARBOXYLASE 7 469 - -
Amo20g0536 471 Pfam Pyridoxal-dependent decarboxylase conserved domain 179 392 IPR002129 GO:0016830|GO:0019752|GO:0030170
Amo20g0536 471 PANTHER - 7 469 - -
Amo20g0536 471 SUPERFAMILY PLP-dependent transferases 87 443 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0536 Amo-Chr20 6764186 6768490 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5229 13 152266420 152268353 Amo20g0536 20 6764186 6768490 PCT
Amo20g0536 20 6764186 6768490 Amo13g5229 13 152266420 152268353 PCT