Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0535 ATGAATGGGATGGAGAGATTGTGGGTGAAGCTTTTAGTTGAGGACAATTTAGGGTTGTTGCTGAATGACATTGAAGATTGTCCTGGGGCATTGGAGATGGTTAAAGCAAATAGGTTTCCAGAAGATAGAGCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCAGAGAAAAGAAGAAGGGACAGGATCAATGCACAGCTTGCAACTCTTAGAAAACTGATTCCTAAGTCTGATAAGATGGACAAGGCTGCATTACTAGGGAGTGTAGTAGATCATGTGAAGGATCTAAAGCGAAAAGCGATGGATGTGAGCAAAAGCATCACAGTTCCAAGTGAAACTGATGAAGTAACAATAATAGAGTGTGACCCTGATCAAGATGAAAGGCTATGCTAA 390 0.4179 MNGMERLWVKLLVEDNLGLLLNDIEDCPGALEMVKANRFPEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMDVSKSITVPSETDEVTIIECDPDQDERLC* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0535 129 Gene3D - 41 104 IPR036638 GO:0046983
Amo20g0535 129 CDD bHLH_AtAIG1_like 41 118 - -
Amo20g0535 129 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 99 IPR036638 GO:0046983
Amo20g0535 129 Pfam Helix-loop-helix DNA-binding domain 49 95 IPR011598 GO:0046983
Amo20g0535 129 SMART finulus 52 101 IPR011598 GO:0046983
Amo20g0535 129 PANTHER TRANSCRIPTION FACTOR BHLH30 37 125 IPR045847 GO:0003700|GO:0006355
Amo20g0535 129 PANTHER TRANSCRIPTION FACTOR BHLH51 37 125 - -
Amo20g0535 129 MobiDBLite consensus disorder prediction 39 60 - -
Amo20g0535 129 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0535 Amo-Chr20 6762486 6764154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0535 25 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 50.538 2.45e-23 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo20g0535 HLH 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0535 - - adu:107459448 166.007