Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo20g0527 | ATGGGAGATAACAATGTGAACCTTCCACCGGGGTTTCGATTTTATCCAACAGATGAAGAGCTTGTGGTCCATTTTCTTCATAGAAAGGCAGCACTCTTACCTTGCCACCCTGATGTCATCCCTGATCTTGATCTCTATCCTTATGATCCTTGGGAACTTGATGGTAGAGCGTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGGAGAACACAGAGTAGGGTGACTGAGAATGGATATTGGAAAGCAACGGGAATGGAAGAACCAGTGATGACAAGCTCAACTAACAAGAGAGTTGGCATCAAGAAATACTTTGTGTTTCATCTTGGTGAATCCCCTTCTGCTATCAAAACAAATTGGATAATGCAAGAATATTGCCTTTCCGATTATTCTGCTTCCTCTAGCAGATCCTCCAAAAGAAAATCAGATTATAGTAAATGGGTGATATGTCGTGTTTATGAGCGGAATGGAGATGATGATGATGGAACGGAGCTGTCTTGTTTGGATGAAGTTTTCTTGTCACTGGATGATCTTGATGAAATAAGCTTACCAAATTAA | 558 | 0.414 | MGDNNVNLPPGFRFYPTDEELVVHFLHRKAALLPCHPDVIPDLDLYPYDPWELDGRALAEGKQWYYYSRRTQSRVTENGYWKATGMEEPVMTSSTNKRVGIKKYFVFHLGESPSAIKTNWIMQEYCLSDYSASSSRSSKRKSDYSKWVICRVYERNGDDDDGTELSCLDEVFLSLDDLDEISLPN* | 186 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo20g0527 | 185 | Gene3D | NAC domain | 17 | 159 | IPR036093 | GO:0003677|GO:0006355 | |
Amo20g0527 | 185 | ProSiteProfiles | NAC domain profile. | 8 | 155 | IPR003441 | GO:0003677|GO:0006355 | |
Amo20g0527 | 185 | Pfam | No apical meristem (NAM) protein | 9 | 127 | IPR003441 | GO:0003677|GO:0006355 | |
Amo20g0527 | 185 | PANTHER | NAC DOMAIN-CONTAINING PROTEIN 104 | 5 | 182 | - | - | |
Amo20g0527 | 185 | PANTHER | NAC TRANSCRIPTION FACTOR 56 | 5 | 182 | - | - | |
Amo20g0527 | 185 | SUPERFAMILY | NAC domain | 5 | 154 | IPR036093 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo20g0527 | Amo-Chr20 | 6689031 | 6690317 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo20g0527 | 1 | 170 | NAC Transcription Factor Family | AT1G61110 | 41.053 | 1.96e-44 | 148 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NAC | Amo20g0527 | NAM | 4.8e-30 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo20g0527 | - | - | gmx:100170712 | 327.02 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo20g0527 | 20 | 6689031 | 6690317 | Amo10g0368 | 10 | 3693817 | 3695306 | hybridization | |
Amo13g5222 | 13 | 152178145 | 152180155 | Amo20g0527 | 20 | 6689031 | 6690317 | PCT | |
Amo20g0527 | 20 | 6689031 | 6690317 | Amo13g5222 | 13 | 152178145 | 152180155 | PCT |