Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0527 ATGGGAGATAACAATGTGAACCTTCCACCGGGGTTTCGATTTTATCCAACAGATGAAGAGCTTGTGGTCCATTTTCTTCATAGAAAGGCAGCACTCTTACCTTGCCACCCTGATGTCATCCCTGATCTTGATCTCTATCCTTATGATCCTTGGGAACTTGATGGTAGAGCGTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGGAGAACACAGAGTAGGGTGACTGAGAATGGATATTGGAAAGCAACGGGAATGGAAGAACCAGTGATGACAAGCTCAACTAACAAGAGAGTTGGCATCAAGAAATACTTTGTGTTTCATCTTGGTGAATCCCCTTCTGCTATCAAAACAAATTGGATAATGCAAGAATATTGCCTTTCCGATTATTCTGCTTCCTCTAGCAGATCCTCCAAAAGAAAATCAGATTATAGTAAATGGGTGATATGTCGTGTTTATGAGCGGAATGGAGATGATGATGATGGAACGGAGCTGTCTTGTTTGGATGAAGTTTTCTTGTCACTGGATGATCTTGATGAAATAAGCTTACCAAATTAA 558 0.414 MGDNNVNLPPGFRFYPTDEELVVHFLHRKAALLPCHPDVIPDLDLYPYDPWELDGRALAEGKQWYYYSRRTQSRVTENGYWKATGMEEPVMTSSTNKRVGIKKYFVFHLGESPSAIKTNWIMQEYCLSDYSASSSRSSKRKSDYSKWVICRVYERNGDDDDGTELSCLDEVFLSLDDLDEISLPN* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0527 185 Gene3D NAC domain 17 159 IPR036093 GO:0003677|GO:0006355
Amo20g0527 185 ProSiteProfiles NAC domain profile. 8 155 IPR003441 GO:0003677|GO:0006355
Amo20g0527 185 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Amo20g0527 185 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 182 - -
Amo20g0527 185 PANTHER NAC TRANSCRIPTION FACTOR 56 5 182 - -
Amo20g0527 185 SUPERFAMILY NAC domain 5 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0527 Amo-Chr20 6689031 6690317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0527 1 170 NAC Transcription Factor Family AT1G61110 41.053 1.96e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo20g0527 NAM 4.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0527 - - gmx:100170712 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0527 20 6689031 6690317 Amo10g0368 10 3693817 3695306 hybridization
Amo13g5222 13 152178145 152180155 Amo20g0527 20 6689031 6690317 PCT
Amo20g0527 20 6689031 6690317 Amo13g5222 13 152178145 152180155 PCT