Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0526 ATGAACGAYCTAATGACYAAGTCATTCACGAGCTACGTGGATCTGAAGAAAGCGGCAATGAAAGACGAATTGGACTTGGAAGCAGGGCAGGGAGTGGAGCTGAGCTCTTCCACCACTCACATGGACACGGACATGGGCCTGTTCTTGGAGGAAGCCGAGAAGGTGAAGACCGAGATGGCGAGCCTCCGCGAGATACTCGAGAGGCTCCAACAGGCCAACGAAGAGGGCAAATCACTCCACAAGCCCGACGCTCTCAAATCTCTAAGGACAAGAATCAATTCCGACATTGTCACGCTTCTCAAGAAGGCCCGGGCCATTCGAGCCCATCTGGAAGACATGGACAAAGCCAACTCCGCAAACAGGAGGCTCTCRGGACTCAAGGACGGGACCACAACCGCCATCTACCGCACTCGGATCGCGGTGACGAACGGGCTCCGGAAGAAGCTGAAGGAGCTGATGATGGAGTTCCAGGGGCTGAGGCAGAGGATGATGACAGAGTACAAGGAGACTGTTGGAAGAAGGTACTTCACGGTGACGGGTGAGTACCCGGACGAAGAGGTGATCGAGAAGATAATTTCGAATGGCGAAGAAGAGGAGTTCTTGGGGAAGGCGATTGGGGAGCATGGGAGGGGGAAAGTGATGGAAACGGTGGTTGAGATTCAGGACAGGCACGATGCGGCGAAAGAGATCGAGAAGAGCTTGCTTGAGTTGCATCAGGTTTTCTTGGACATGGCGGTTATGGTGGAGGCTCAAGGGGAGAAGATGGATGACATTGAGCACCACGTGATCCATGCTTCTCACTACGTTAAGGATGCTAACAAAGAACTTGTGAGCGCTAACAAGTACCAGAGGAACAGTAGGAAGTGGCTCTGCATTGGGATCATCATTCTTCTCATCCTCATCCTTGTTATTGTCATTCCCATCGCCACCAGTTTCAGTAGCTCTTGA 948 0.5232 MNDLMTKSFTSYVDLKKAAMKDELDLEAGQGVELSSSTTHMDTDMGLFLEEAEKVKTEMASLREILERLQQANEEGKSLHKPDALKSLRTRINSDIVTLLKKARAIRAHLEDMDKANSANRRLSGLKDGTTTAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMTEYKETVGRRYFTVTGEYPDEEVIEKIISNGEEEEFLGKAIGEHGRGKVMETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVIHASHYVKDANKELVSANKYQRNSRKWLCIGIIILLILILVIVIPIATSFSSS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0526 315 Coils Coil 49 79 - -
Amo20g0526 315 Pfam SNARE domain 254 305 IPR000727 -
Amo20g0526 315 Gene3D - 40 171 - -
Amo20g0526 315 PANTHER SYNTAXIN 5 308 IPR045242 -
Amo20g0526 315 CDD SynN 45 204 IPR006011 GO:0016020
Amo20g0526 315 CDD SNARE_syntaxin1-like 216 277 - -
Amo20g0526 315 Coils Coil 142 162 - -
Amo20g0526 315 Pfam Syntaxin 48 252 IPR006011 GO:0016020
Amo20g0526 315 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 308 - -
Amo20g0526 315 Gene3D - 212 313 - -
Amo20g0526 315 SMART tSNARE_6 212 279 IPR000727 -
Amo20g0526 315 SUPERFAMILY t-snare proteins 43 272 IPR010989 GO:0016020|GO:0016192
Amo20g0526 315 ProSitePatterns Syntaxin / epimorphin family signature. 223 263 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo20g0526 315 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 217 279 IPR000727 -
Amo20g0526 315 SMART SynN_4 40 168 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0526 Amo-Chr20 6630363 6631676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0526 1 315 SNARE and Associated Proteins AT1G08560 65.831 3.33e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0526 K08486 - gmx:100816016 494.967