Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0515 ATGAAGGGGTGTGGTGGGGACAGTCACAGGCGTGCAAGCGTGAAGATTAGTGTGGGAAACGTGGAGATGGTGACTTCAACTTGCAAGGGTTCTTTTCTTGTTTGTGCAATTTTGGTGCTTGATTTGGTGCTTAAGGTCTCTGGCAATGCAGAAGGTGATGCCCTAAATGCATTGAAGAGCAACTTACAAGATCCTAACAATGTTCTTCAAAGCTGGGATGCCACCCTTGTCAATCCATGCACATGGTTTCATGTTACATGCAATAGTGATAATAGTGTGACCCGTGTTGATCTTGGAAATGCAGATCTATCGGGTACATTGGTTCCAAACCTTGGTAATCTACCAAATTTACAGTACCTGGAGCTTTATAGTAATAATATAACTGGAAAAATCCCAGACGAGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAATGTGCTAACTGGTCCAATACCAGCTACATTGGGCAAGCTTAGTAATCTACGCTTCCTGCGTCTCAACAATAACACCTTGTCAGGAGGCATTCCCATGTCTTTGACCGGGATCACTTCACTGCAAGTTCTTGATCTCTCAAACAACCACCTAAAAGGAACTGTGCCAGTCAATGGTTCATTTTCATTGTTTACTCCGATCAGTTATCAAAATAATCCTGRCTTGATACAACCAAAGAATGCTCCTTCTGCACCATTATCTCCTCCATCAGCACCTTCTTCAGGTAACAGTGCTACTGGAGCTATTGCTGGAGGAGTTGCTGCAGGTGCTGCTTTGTTGTTTGCAGCCCCTGCTATCGCACTTGCATATTGGCGAAGAAGGAAGCCTCAGGATCATTTCTTTGATGTCCCTGCTGAGGAGGATCCTGAAGTTCACCTAGGCCAGCTTAAAAGGTTTTCGCTGCGTGAGCTGCAAGTTGCAACAGATAACTTTAGTAACAAACATATTCTTGGTAGAGGTGGATTTGGGAAGGTATATAAAGGGCGTTTAGCTGATGGTAGTCTTGTAGCAGTAAAAAGGCTGAAAGAGGAGCGCACACAGGGTGGGGAGCTGCAATTTCAAACAGARGTGGAAATGATCAGCATGGCCGTGCATCGCAATTTGCTTCGGCTCCGTGGTTTTTGCATGACACCTACTGAACGGTTGCTTGTGTATCCTTTCATGGTTAACGGAAGTGTGGCATCATGTTTACGAGAACGTAATGAATCTCAACCGCCACTTGACTGGCCAATACGCAAGCGTATTGCATTGGGAGCTGCTAGGGGGCTTGCTTATTTGCACGACCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCTGCAAATATATTATTGGATGAAGAATTTGAAGCAGTTGTTGGAGATTTTGGCTTAGCGAAACTTATGGATTACAAAGATACTCATGTTACCACTGCTGTACGTGGTACAATTGGGCATATAGCACCAGAGTACCTCTCAACTGGGAAGTCRTCAGAGAAGACSGATGTTTTTGGATACGGTGTGATGCTTCTTGAACTAATAACCGGGCAGAGGGCTTTCGATCTGGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGGCTTCTTAAAGACAAGAARTTGGAAACACTGGTTGACGCGGATCTGCAGGGCAATTATAACGATGAGGAGGTAGAGCAGCTAATCCAAGTAGCGTTGCTATGCACACAAGGCTCCCCTATGGAAAGACCGAAGATGTCCGAGGTGGTTAGAATGCTAGAAGGCGACGGTTTGGCCGAAAAATGGGAGCAGTGGCAGAAAGAGGAGATGTTCCGTCAAGATTTCAACCACATCCATCACCCCAATGCAAATTGGATAGTAGACTCTACTTCTCACATCCAAGCAGATGAACTATCTGGTCCTAGATGA 1908 0.4471 MKGCGGDSHRRASVKISVGNVEMVTSTCKGSFLVCAILVLDLVLKVSGNAEGDALNALKSNLQDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNADLSGTLVPNLGNLPNLQYLELYSNNITGKIPDELGNLTNLVSLDLYLNVLTGPIPATLGKLSNLRFLRLNNNTLSGGIPMSLTGITSLQVLDLSNNHLKGTVPVNGSFSLFTPISYQNNPXLIQPKNAPSAPLSPPSAPSSGNSATGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERNESQPPLDWPIRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGNYNDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEEMFRQDFNHIHHPNANWIVDSTSHIQADELSGPR* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0515 635 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 34 635 - -
Amo20g0515 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Amo20g0515 635 Pfam Leucine rich repeat N-terminal domain 49 88 IPR013210 -
Amo20g0515 635 ProSiteProfiles Protein kinase domain profile. 312 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0515 635 Pfam Protein kinase domain 313 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0515 635 SUPERFAMILY Protein kinase-like (PK-like) 291 587 IPR011009 -
Amo20g0515 635 Gene3D Phosphorylase Kinase; domain 1 281 388 - -
Amo20g0515 635 SUPERFAMILY L domain-like 51 214 - -
Amo20g0515 635 MobiDBLite consensus disorder prediction 223 247 - -
Amo20g0515 635 Gene3D Transferase(Phosphotransferase) domain 1 389 606 - -
Amo20g0515 635 Gene3D Ribonuclease Inhibitor 48 231 IPR032675 -
Amo20g0515 635 SMART serkin_6 312 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0515 635 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515
Amo20g0515 635 PANTHER BNAA08G11770D PROTEIN 34 635 IPR031048 GO:0004675|GO:0005102|GO:0006468
Amo20g0515 635 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0515 Amo-Chr20 6530820 6537013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0515 37 635 Receptor kinase-like Gene Family AT4G33430 78.737 0.0 982
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Amo20g0515 Pkinase 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0515 K13416 - gmx:100800522 1081.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0515 20 6530820 6537013 Amo10g0354 10 3553726 3559909 hybridization