Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0511 ATGGACGTGTTATCGATGAGCAGTTTAAAAACAGTACCTAACCAGTGGTGTGGAGTCCCAGAGCGAAAAAGAGGGGTGGTTTCATGCAGAGCGACAAGGGTAGCAAACAGCAACAGTAACTTGTACAAGGTGCTGTCACTGAGTCCCAAGAGTGCAACAATGGATGATATCAAGAGAGCATACAGATCAATGGCTCTAAGGTACCACCCTGACGTCTGCCATGACCCTTCCAAGAAAGATGAATCCACAAGGCTTTTCGTGCAGCTCAATCAAGCTTATGAGACCTTGTCTAATCCCACCCTCAAACAAGAGTACGATCATCAATTAGGCTTGATAACCGCTCATGATGAAAACTCCAGAAAGAGGTGGAAGGAGCAACTAGCTGAGTTGAAGACAAGGTCCCATAGAAAACAGGGATCATGGGGTAGTAGAATGAGGGCCCAAAACGTTATCATCATGATGAACAACCACAACTAG 477 0.457 MDVLSMSSLKTVPNQWCGVPERKRGVVSCRATRVANSNSNLYKVLSLSPKSATMDDIKRAYRSMALRYHPDVCHDPSKKDESTRLFVQLNQAYETLSNPTLKQEYDHQLGLITAHDENSRKRWKEQLAELKTRSHRKQGSWGSRMRAQNVIIMMNNHN* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0511 158 ProSitePatterns Nt-dnaJ domain signature. 86 105 IPR018253 -
Amo20g0511 158 PRINTS DnaJ domain signature 43 61 IPR001623 -
Amo20g0511 158 PRINTS DnaJ domain signature 61 76 IPR001623 -
Amo20g0511 158 PRINTS DnaJ domain signature 81 101 IPR001623 -
Amo20g0511 158 Gene3D DnaJ domain 27 139 IPR036869 -
Amo20g0511 158 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 22 150 - -
Amo20g0511 158 SMART dnaj_3 39 101 IPR001623 -
Amo20g0511 158 ProSiteProfiles dnaJ domain profile. 40 109 IPR001623 -
Amo20g0511 158 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 22 150 - -
Amo20g0511 158 SUPERFAMILY Chaperone J-domain 28 109 IPR036869 -
Amo20g0511 158 Pfam DnaJ domain 40 106 IPR001623 -
Amo20g0511 158 CDD DnaJ 40 98 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0511 Amo-Chr20 6460425 6461024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0511 40 112 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.474 1.56e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0511 - - vun:114187063 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0511 20 6460425 6461024 Amo10g0348 10 3507024 3507500 hybridization