Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0504 ATGGCTCCATCCCCTGGGAAATCACCATGGAGAGTAGCAAATAGTCCTTCTTCCCCAACTGCATCAATGCTTGCAAGTGCTAGGAAGTCATTTATAGCTAAGAATATCATTTGGATTGCTGGTGCTGGTCTTTTGATATTTATTTTGTTAGGCGTTTGTATTTTTATGCTGTGGTGCTTTAAACGAAGGCCAGAGAAGAAAAATGCCAAGAAGCAAAATGTTAGTGTCTTCGAAAGTCCTTTACATAAACCTACTTGCAGTGACACTTCCTTTGAAGCAACCAATCAGGAGGTGAAAGTTGAGAAACCATCACTTGTATCTGAAGTGCTAAATAGAAAAACAAATTTGATTCCAAAGGTTCAGGATGAACAAGGAAAATATGTGAAAACAGCATCTGCAACTTCACAATACAATCATGGTTCTGAGTTAATCAACACTAGTGAGGCTTCCAAACTTTCACACCTCCAGCCACCACCGCGTCCTTACCCAATGACACAAAGTCAGAAGTTGATCCTCAATCCAGCTATACCTGCCAAAGGGTCTGAAATAAATGACAAAACATGTTCCCTTGAAGTTTATTCTATTGCATCACTTCAACAATATACCAATAGCTTTTCCCAAGAAAATTTTATTGGGGAAGGCACCTTAGGGCCTGTTTATAGGGCTGAGTTCCCTGATGGAAAGATATTGGCTGTGAGGAAATTAGATGCCACTGCTTCTATGGAGCAGAACCATGAACAATTTCTCCAATTAGTGTCCAACATCTCAAAAATTCAGCACCCTAATATTGTGAAGTTTACGGGCTACTGTACCGAGTATAGCCAACGGCTGCTTGTGTACGAGTATTGCAGTAATGGAACCCTGCATGATGCACTGCATGGCGATAGTGAATGCCGTATTAGACTAACATGGAATGCTCGAATTCAGGTGGCTCTTGGAGCTGCAAGAGCTTTAGAGTATATGCATGAGAACTTTCGGCCACCTATTGTGCACCGAAATTTTAAGTCTGCCAATGTACTCCTAAATGACAACCTTGAAGTGTGCATCTCTGATTGTGGATTAGGTCCTTTGCTATCTTCTGGCTCTGCTGGTCAGTTATCAGGACGACTCCTCACGGCTTATGGTTACAGTGCTCCAGAATTTGAGTTCGGAAGCTATACACATCAAAGTGATGTATTCAGTTTTGGAGTGGTAATGTTGGAACTTCTCACGGGACGAAAATCCCACGACAGGTCACTTCCGCGAGGGGAGCAAATATTGGTGAGATGGGCAGTCCCTCAACTCCATGACATTGATGCATTGTCGAAAATGGTTGACCCCAGCTTAAATGGAGCCTATCCTATGAAGTCCTTGTCGCGTTTTGCAGATATTGTTTCTTCATGCGTCCAGCATGAACCTGAATTCAGGCCAGCAATGTCTGAAGTTGTTCAAGATCTTCTAAGGATGATGTAA 1452 0.4242 MAPSPGKSPWRVANSPSSPTASMLASARKSFIAKNIIWIAGAGLLIFILLGVCIFMLWCFKRRPEKKNAKKQNVSVFESPLHKPTCSDTSFEATNQEVKVEKPSLVSEVLNRKTNLIPKVQDEQGKYVKTASATSQYNHGSELINTSEASKLSHLQPPPRPYPMTQSQKLILNPAIPAKGSEINDKTCSLEVYSIASLQQYTNSFSQENFIGEGTLGPVYRAEFPDGKILAVRKLDATASMEQNHEQFLQLVSNISKIQHPNIVKFTGYCTEYSQRLLVYEYCSNGTLHDALHGDSECRIRLTWNARIQVALGAARALEYMHENFRPPIVHRNFKSANVLLNDNLEVCISDCGLGPLLSSGSAGQLSGRLLTAYGYSAPEFEFGSYTHQSDVFSFGVVMLELLTGRKSHDRSLPRGEQILVRWAVPQLHDIDALSKMVDPSLNGAYPMKSLSRFADIVSSCVQHEPEFRPAMSEVVQDLLRMM* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0504 483 Pfam Protein tyrosine and serine/threonine kinase 208 479 IPR001245 GO:0004672|GO:0006468
Amo20g0504 483 PANTHER OS01G0253100 PROTEIN 9 482 IPR045271 GO:0004714|GO:0006468
Amo20g0504 483 ProSiteProfiles Protein kinase domain profile. 205 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0504 483 Gene3D Phosphorylase Kinase; domain 1 176 282 - -
Amo20g0504 483 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 9 482 - -
Amo20g0504 483 SUPERFAMILY Protein kinase-like (PK-like) 188 479 IPR011009 -
Amo20g0504 483 Gene3D Transferase(Phosphotransferase) domain 1 283 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0504 Amo-Chr20 6298738 6303924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0504 11 483 Strubbelig Receptor Gene Family AT4G03390 50.101 1.71e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Amo20g0504 PK_Tyr_Ser-Thr 2.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0504 - - ahf:112783685 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0504 20 6298738 6303924 Amo10g0164 10 1743702 1748750 hybridization