Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0483 ATGAATGACCTGTTTTCAGGTTCCTTCAGAAAATATAGCAGTGACCTGAAGGAGGAAAGGCAGCTTGATGATGTGGAGGCTGGAAGGGAAAGCCTAAATCTGGAGAAATTCTTTGAAGAAGTGGAGGGTGTAAAAGATGAGATGAAAGTGGTTGAGAGCCTCTGCAGAAAATTGCAAGAAGCCAATGAAGAAAGCAAAACCATTCATGATGCCAAAACCGTTAAGGATCTTCGAGCTCGGATGGACAAAGATGTTGTGCAGGTCCTCAAGCATGTTAAGATCATCAAAACCAAGCTTGAATCTCTACAGCGTTCCAACGCAGCGAATCAAAACGTTCCTGGCTGTGGTCCTGGTTCTTCTGCAGACAGAACCAGGACTTCAGTGGTTAGTGGATTAGGGAAGAAGCTAAAGGACATGATGGACGATTTTCAAGGCTTGAGAGCAAGGATGCAACATGAGTACAAGGAAACCATTGAGCGCAGGTACTTCACAATCACAGGGGAGAAGGCAGATGAAGAGACCATAGAGAATTTGATATCAAGTGGAGAGAGTGAAAATTTGGTACAGAAAGCGATTCGAGAACAAGGTAGGGGTCAGATAATGGACACCATATCAGAAATTCAAGAAAGGCATGATGCTGTAAAGGAAATTGAGAAGAATTTGATAGAGTTGCATCAGGTGTTCTTGGACATGGCAGCTTTGGTAGAGTCTCAGGGGGAACAGCTTAATAACATAGAGAGTCATGTAGCGCATGCAAGCTCATTCGTTACTCGCGGTGTTTCTCAGCTTCAGGAAGCTAGAGATTATCAAACCAACTCTAGGAAGTGGTATTGCTATGCCATCATTCTTGCTATTCTCCTCATCCTTTTACTCTTGGCTCCTCTCTTGTTAAATCTTTTACCACATTTCAGAAGAAGGTGA 921 0.4332 MNDLFSGSFRKYSSDLKEERQLDDVEAGRESLNLEKFFEEVEGVKDEMKVVESLCRKLQEANEESKTIHDAKTVKDLRARMDKDVVQVLKHVKIIKTKLESLQRSNAANQNVPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQHEYKETIERRYFTITGEKADEETIENLISSGESENLVQKAIREQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGEQLNNIESHVAHASSFVTRGVSQLQEARDYQTNSRKWYCYAIILAILLILLLLAPLLLNLLPHFRRR* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0483 306 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo20g0483 306 CDD SynN 34 191 IPR006011 GO:0016020
Amo20g0483 306 SMART tSNARE_6 199 266 IPR000727 -
Amo20g0483 306 Pfam SNARE domain 240 292 IPR000727 -
Amo20g0483 306 SMART SynN_4 29 155 IPR006011 GO:0016020
Amo20g0483 306 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Amo20g0483 306 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Amo20g0483 306 PANTHER SYNTAXIN 11 295 IPR045242 -
Amo20g0483 306 Coils Coil 41 64 - -
Amo20g0483 306 PANTHER SYNTAXIN-124-RELATED 11 295 - -
Amo20g0483 306 CDD SNARE_syntaxin1-like 203 265 - -
Amo20g0483 306 Gene3D - 197 296 - -
Amo20g0483 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Amo20g0483 306 Gene3D - 34 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0483 Amo-Chr20 6083931 6084851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0483 1 303 SNARE and Associated Proteins AT1G61290 73.597 9.92e-168 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0483 K08486 - gmx:100818999 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0483 20 6083931 6084851 Amo20g0483 20 6083931 6084851 ECH
Amo13g4084 13 133840102 133841837 Amo20g0483 20 6083931 6084851 PCT
Amo20g0483 20 6083931 6084851 Amo13g4084 13 133840102 133841837 PCT