Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0481 ATGACAGAAACTTGGTTAAGTTCTGTTTTTGAAGAAGGGAGATTCTGTGAAATCTTTCACTCAAATGCATCTGGTTGGAGGACTTGTGAGACTTGTAGGAAGCGGGTTCATTGTGGATGTATTGTTTCAAGTCATGCCTTTATGTTGTTGGATCCTGGAGGAATTGAGTGCCTTGCATGTGCCCGCAAACATATGGTTTTGCCATCTAACTCGCCATGGCAACAATCTTTCTCCCTTCAAAATCGTTTACCAGAAAGAATTAGAGACATGTCTGGAAAAAATTGGAGTCAATTAGCTGGATCAGGTCCTGTTCCATGGAAACAAGCACCGAGTTTGTTCAACTCAGTTTCTTCATCTGACTTACATCCAGATGTGCCATCCCTAGTTGAATTGTCTAATAGCATTGACAAAAGGTATGTCATTGAAAGGTTACCTGCCTCGACCATGGAAAAGAAAAATGACGATTTGTCTGGAATATCTGTTAACTGGAGTGTAAAGCTTGGTACCCGGGAAACGATGTTTATGAATGGAATAAGGAATGATGACAAACCAAGTTCAGGTTTAAATATGTGCCAGCAGCCTCCATCTCTGAAGGAAGATTCATCTTCTCAACCATTTGGTATGTCTATACCTTATGCATCTGCAAATGAAAGAAATGGTCAAATTGGAGTGACAGGAAGTCATTCACAACAAATACAAACTCCCCCAGGAAAACATTTCAGTGGCCTTATGCAATTAGCGCTTGACTCATCAAGTGAAGCTCTGGTTCGTAATGGACGGCCTCGGGCAGATGCCCGAGGAAGAAACCAGTTATTGCCACGGTACTGGCCCAGGTGTACTGATCTAGAGCTACAACAAATATCTATAGATTCTAATTCAGTAATCACTCCCTTGTTTCAAAAAACCTTGAGTGCCAGTGATGCTGGGAGAATTGGGCGTTTAGTTCTACCAAAAAAGTGTGCCGAGGCCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAATAGCAGGATGTATGTTTTAGAGGGTGTCACTCCTTGCATACAGTCAATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGTCGATTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTTCAAATGCCACGCCATCTGATCAGGACAATGAAACAAATAAGAATGGAAATGGATTTTCTGCACCTGGTGAAGTTGAGTTGGCTGATCCTAGTTCATGGTCTAAAGTTGATAAATCTGGCTACATAGCAAAAGATGCATTGGGGAGCAAATCTTCAATGCCTAGAAAGAGAAAGCTCAACATCTTGGGTTCAAAAAGTAAACGTCTAAAAATTGAAAGTGAGGATATGATAGAGCTGAAGATTACGTGGCAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAGCCATGTCCCAAGTATTGTTGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCGGTGCTTGGAAAGCCTACAATTTTCACAGATGATAATACGGGTGAAAAAGTCCAGTGGGCTCAGTGCGAAGATTGTCTCAAATGGCGTAAATTGCCAGCAAGTGCACTTCTTCAATCAAAATGGACATGTTCAGATAATTCATGGGACCCAGAAAGATCTTCATGTTCGGCTGCTCAAGAGATGACAACAGAAGAGATTGAGAATTTGCTTCCACCTTGTAATTCAGCTGCTTCTAAGAAAATGAAGGCTACTAAGCAGGAATCTGATAATGCTGAAGCTTTGGAGGGACTTGACACACTCGCAAATTTAGCTATTTTGGGAGAGGGTGAGTCACTCCCTACGTCTGCCCAGGCCACGACTAAACACCCGCGTCATAGGCCGGGCTGCTCATGTATTGTTTGCATTCAACCTCCCAGTGGAAAGGGCCCCAAACATAAGCAGTCATGCACATGTAATGTCTGCTTAACGGTGAAGCGTCGATTCCGGACTCTAATGTTACGACGTGAAAAGAAACAATTTGAGAAGGAAGCAGAGACTACACGTAAAAAACAAAAGCAACCGCATTCTCAACCATTACATTCTTCTGAAATTTTTTTTGACGATGATTCCTTGCCTTGTAGTAACCCTGTCGATAGTAGTAGCCCAAATCAAAACAAGGAAGGTAATGAGGTTTCTGACGAAGATCCAAACCAGGTAAAATCATCTACCTCACCTTTTAAAGGCCAAATCGACCTGAATATCCAGCCAGAGCGTGAAGAAGAGTCATCTCCCGGTTCAGATTCCGGTGGCATGATGAAATCGCTCCACAATGCTGTCGAGAGGTGTACGAAACCGACATTGAACAGCGGTATTGGAGATACATCTGGAAGTCAGTCACGTCAGGTTGCGGATGGAGCCGGGGAAGATAAACTTAGCAATGGTGTAGCTCTCGGCAGTAGTAGTCATGGTAGCAAGGAACATGCACAAGCTTTGCCTATGAATATGTGA 2529 0.4318 MTETWLSSVFEEGRFCEIFHSNASGWRTCETCRKRVHCGCIVSSHAFMLLDPGGIECLACARKHMVLPSNSPWQQSFSLQNRLPERIRDMSGKNWSQLAGSGPVPWKQAPSLFNSVSSSDLHPDVPSLVELSNSIDKRYVIERLPASTMEKKNDDLSGISVNWSVKLGTRETMFMNGIRNDDKPSSGLNMCQQPPSLKEDSSSQPFGMSIPYASANERNGQIGVTGSHSQQIQTPPGKHFSGLMQLALDSSSEALVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASNATPSDQDNETNKNGNGFSAPGEVELADPSSWSKVDKSGYIAKDALGSKSSMPRKRKLNILGSKSKRLKIESEDMIELKITWQEAQGLLRPPPSHVPSIVVIEGFEFEEYEDAPVLGKPTIFTDDNTGEKVQWAQCEDCLKWRKLPASALLQSKWTCSDNSWDPERSSCSAAQEMTTEEIENLLPPCNSAASKKMKATKQESDNAEALEGLDTLANLAILGEGESLPTSAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQSCTCNVCLTVKRRFRTLMLRREKKQFEKEAETTRKKQKQPHSQPLHSSEIFFDDDSLPCSNPVDSSSPNQNKEGNEVSDEDPNQVKSSTSPFKGQIDLNIQPEREEESSPGSDSGGMMKSLHNAVERCTKPTLNSGIGDTSGSQSRQVADGAGEDKLSNGVALGSSSHGSKEHAQALPMNM* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0481 842 MobiDBLite consensus disorder prediction 742 757 - -
Amo20g0481 842 MobiDBLite consensus disorder prediction 788 809 - -
Amo20g0481 842 Gene3D - 531 585 - -
Amo20g0481 842 MobiDBLite consensus disorder prediction 720 734 - -
Amo20g0481 842 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 7 776 - -
Amo20g0481 842 Coils Coil 588 608 - -
Amo20g0481 842 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 7 776 - -
Amo20g0481 842 MobiDBLite consensus disorder prediction 400 418 - -
Amo20g0481 842 Pfam CW-type Zinc Finger 532 574 IPR011124 GO:0008270
Amo20g0481 842 MobiDBLite consensus disorder prediction 399 431 - -
Amo20g0481 842 MobiDBLite consensus disorder prediction 177 204 - -
Amo20g0481 842 ProSiteProfiles Zinc finger CW-type profile. 527 577 IPR011124 GO:0008270
Amo20g0481 842 SUPERFAMILY DNA-binding pseudobarrel domain 296 398 IPR015300 -
Amo20g0481 842 Pfam B3 DNA binding domain 299 398 IPR003340 GO:0003677
Amo20g0481 842 SMART B3_2 299 400 IPR003340 GO:0003677
Amo20g0481 842 MobiDBLite consensus disorder prediction 686 842 - -
Amo20g0481 842 CDD B3_DNA 297 398 IPR003340 GO:0003677
Amo20g0481 842 MobiDBLite consensus disorder prediction 182 204 - -
Amo20g0481 842 Gene3D - 277 403 IPR015300 -
Amo20g0481 842 ProSiteProfiles B3 DNA-binding domain profile. 299 400 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0481 Amo-Chr20 6067638 6076318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0481 9 70 B3 DNA Binding Superfamily AT4G32010 46.774 2.02e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo20g0481 B3 9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0481 - - vra:106775753 1408.66