Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0479 ATGCAAACGACGTACTTGGAGAGATCAAGGGAGAAGCGAAGTTTGGATTCAACCTCCGCTGATGAAGATGAACCTCAAAAGAAGAGGCCTGCGTTGGCCAGTGTAATTGTTGAAGCCCTGAAGGTGGACTGTCTGCAGAAACTTTGTTCATCACTGGAGCCTATCCTACGTAGAGTTGTTAGTGAAGAAGTGGAGCGTGCTTTAGCAAAACTAGGCACTGCCAAGCTTAGTGGGAGGACTTCTCCTAAGCAAATAGAAGGTGATGATGTTGGCAATTTACAATTACAATTCAAGACCAGGTTATCTCTTCCTCTCTTTACCGGTGGGAAAGTGGAGGGAGAGCAGGGCACAGCCATACATATTGTCCTGGTTGATGCAAGCACAGGCCATATTGTGACATCTGGTCCAGAGTCATGTGCAAAATTAGATGTTATTGTGCTTGAAGGGGATTTCAATAATGATGATGATGATAATTGGAGTGAAGAAGAATTTGAGAGTCATGTTGTGAAAGAGCGAGAAGGAAAGAGACCTCTTTTGACTGGTGATCTGCAAGTGATACTGAAGGATGGTGTAGGTACATTGGGTGAGCTTACATTTACAGACAACTCTAGCTGGATAAGGAGTAGGAAGTTCAGGTTGGGGCTCAAAGTTTCCTCAGATTGTAATGAGGGAAAGCGTATTCGTGAAGCCAAAACAGAAGCTTTCACTGTTAAAGATCACCGGGGAGAATTATACAAGAAACACTATCCACCTGCCCTGAATGATGAGGTCTGGAGACTGGAGAAGATCGGCAAGGATGGGTCCTTTCACAAAAGGTTAAATAGAGCAGGAATATTTACTGTTGAAGATGTCCTAAGACTTGTGGTTAAAGACCCACAGAGGTTGCGAAATATTCTTGGGAGTGGCATGTCAAATAAAATGTGGGATGTCCTCGTTGAACATGCAAAGACTTGTGTTCTCAGCGGAAAACTTTATGTGTACTATCCTGATGATGCAAGGAGTGTTGGTGTTGTTTTCAATAACATCTACGAGTTGAGTGGCTTAATAGCTAATGATCAATACTACTCGGCTGATTCTCTCTCTGATAGTCAAAAAGTATATGTGGACACATTGGTGAAGATGGCATATGAAAATTGGATGCATGTAATTGAGTATGATGGCAAGTCTCTCCTAAATTACAATCAGAAGACATTGGGCACTGCTCAACTTCAACATCTAATGGATTCCCATAATTATTCAAATTCAAACTTGCTTGATCACCAGACCTCCTTCCCAAATTCACCTGTTCCTGTACCTACAAGGCAACCTTCGATGGATCCAGGAGTAACATTTGCAGGTTATCATGATAGTGCTGCTACTAGATTCTCAATGCAACCGCAGAATGCTAATCTTAATTCTTCAATGCAGTACGATAAGACAATGTTCCCACAACCAAACCAAATGATGAGTGCTTCACACCATGCTCAACTTCTAAGAAATGGTCCAACACAAATAGACACTCCTGGCTTACACACTAATGGCATTTCTAATCCTAGTTATAGAGGATATGAAGATTACTTTCCAGCGGAGGAGATTAGAAGCAGAAGTCACGAGATGCTAGAGAATGAAGATATGCAGCATCTGCTACGCATTTTTAATATGGGTGGCCAACCCCGTACTCCCTTAAATGCCGAAGATGGATACCCTTATTTATCTAACTACATGCCTACAGACTCCATGAGCTACAACTTTGAGAATGGGCAGAACCGTTCGTCAGGAAAGGCCGTCGTGGGCTGGCTAAAGCTTAAGGCAGCTTTGAGATGGGGCATTTTTATTCGGAAGAAGGCAGCCGAGAGGCGGGCTCAGCTCGTTGAGTTGGATGACCTCTAG 1869 0.4312 MQTTYLERSREKRSLDSTSADEDEPQKKRPALASVIVEALKVDCLQKLCSSLEPILRRVVSEEVERALAKLGTAKLSGRTSPKQIEGDDVGNLQLQFKTRLSLPLFTGGKVEGEQGTAIHIVLVDASTGHIVTSGPESCAKLDVIVLEGDFNNDDDDNWSEEEFESHVVKEREGKRPLLTGDLQVILKDGVGTLGELTFTDNSSWIRSRKFRLGLKVSSDCNEGKRIREAKTEAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNRAGIFTVEDVLRLVVKDPQRLRNILGSGMSNKMWDVLVEHAKTCVLSGKLYVYYPDDARSVGVVFNNIYELSGLIANDQYYSADSLSDSQKVYVDTLVKMAYENWMHVIEYDGKSLLNYNQKTLGTAQLQHLMDSHNYSNSNLLDHQTSFPNSPVPVPTRQPSMDPGVTFAGYHDSAATRFSMQPQNANLNSSMQYDKTMFPQPNQMMSASHHAQLLRNGPTQIDTPGLHTNGISNPSYRGYEDYFPAEEIRSRSHEMLENEDMQHLLRIFNMGGQPRTPLNAEDGYPYLSNYMPTDSMSYNFENGQNRSSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLVELDDL* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0479 622 Pfam Calmodulin binding protein central domain 252 318 IPR046830 -
Amo20g0479 622 MobiDBLite consensus disorder prediction 1 28 - -
Amo20g0479 622 Pfam Calmodulin binding protein C-terminal domain 323 385 IPR046829 -
Amo20g0479 622 Pfam Calmodulin binding protein-like N-terminal domain 93 240 IPR046831 -
Amo20g0479 622 PANTHER CALMODULIN-BINDING PROTEIN 6 620 - -
Amo20g0479 622 PANTHER OS02G0177800 PROTEIN 6 620 IPR012416 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0479 Amo-Chr20 6050121 6053870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0479 1 621 Calmodulin-binding Proteins AT2G18750 59.969 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0479 - - gmx:100802994 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g4363 13 139496758 139498662 Amo20g0479 20 6050121 6053870 PCT
Amo20g0479 20 6050121 6053870 Amo13g4363 13 139496758 139498662 PCT