Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0467 ATGCAAGGTTGCATTGGTGTGGTCCATTTATCTATCTACTACTCTCTGATCATCAAGGAAGTCAATGCGAGTGAGGATTCCACAACCACCGTCGTTTCGCCGGAAAATGGCTTTGTTGCACCACAACCACTGACAACTCCAGCTATTATGGGCTACGATGAACAACTCAAACCGTGCCGGAATAACTTGCCGGAATCCTCCAATCCCCGGCGAGTTGTCAACCTTATTTCATCCCTAATCTCCATCTCCCTCTCGATTAGGGTCTTCGCCGGAAAATGGCAACTGATTCGCAACAAGCTCGAGGAGCTCTACTCCGGTCTAGTCGGAGCCGACGACGACCCTTCACTCTCCGGCGTTCTCCCTGCGATCCTCTCCACCGCGGAGGAGTGTTCCGACCTAGCTCGCCGCTGCACCGATCTGACATACAGCGGGAAGCTTCTTATGCAGAGCGACTTAGAGGTGGTTTTCGCGAAGCTCCATTGCCATGTGAAGAAGCTGTCTGAGATGTACACGAAGGGTGTTCTCACACACAGCTACGCTCTGGTGGTCTCAAAGCCTGGACTTGGAGCTTCCAAAGAGGACATGAGGTTCTTCGTGAGGGACCTACTCACCAGAATGAAGGTTGGCGATGTTAGTATGAAGAAGCAGGCATTGATCAACCTCCACGAAGTTGCTTCCGAAGACGACAAGTACGTGAAGGTGATTGTTGAAGTCGGTGACGTTGTTCATGTTCTGGTTGATTTTCTAGGGTCCTCTGAGTTGGAGATTCAACAAGAGTCTGCAAAGGTAGTTTCTTTGATTGCGGGGTTTGATTCTTATAAAGGAGTTCTTGTTGGCGCTGGCGTTGTTGCGCCTTTGGTTAAGGTTTTGGAGTGTTCAAGTGAGACTGGCAAAGTTGCTGCTGCCTTGTGTCTGCAGAGTTTGACTGAGAATTCCGATAATGCTTGGTCGGTTTCCGCTCACGGCGGCGTCACGGCGTTGTTGAAGATTTGTGGCGGTGTAGATTGCAGAGCAGAATTGGTTTGTCCTGCTTGTGGAGTTCTGAGGAATCTGGTTGGTGTTGAAGAGATTAAGAGGTTCATGGTTGATGAAGGTGCGGTTTCAAGCTTCATTAGGCTTATGAGGTCAAGGGACGAAGCGATTCAGGTGAGTTCCATTGAGTTTCTTCAGAGTATTGCATCCGGAGATGAGTCATTGGTTAAGCAGATTGTTGTTAGAGAAGGCGGGGTTCGTGTTTTGCTGCGACTTTTGGATCCTAAATGGCCTTGTTCTTCCAAAACAAGAGAGGTAGTGATGAGGGCTATTGAGAATTTGTTCTTCTCTTGGTCTAGTTGTGTCACTATTTTGATGAGCTATGGTTTTGTGGATCAATTGATGTACTATATTCGAAACGGCGACGTTTCTGTTCAAGAATTGGCTCTCAAAGTTGCGTTTAGATTGTGTGGAACATGTGAAGATGCTAAGAAAGCTCTAGGTGATGCTGGATTCATGGCAGATCTTGTTAAGTTTCTAAATGTGAAATCATTCGAGGTTCGAGAAATGGCGGCCGAGGCACTCTCCGGGATGGTTATGGTTGCCAAGAACAGGAAGAGGTTTGTGCAAGATGATGAAAGCATTGCTCTTCTTCTGCAGTTGTTGGATCCAGAGGAGGGGAATTCAGGTAACAACAAGTTCTTGATCTCTGTATTGATGTCATTGACGCATTGCAACAGTGGGAGGAAGAAGATTGTGAGTTCTGGGTATGCTAAGAACATAGAGAGGCTTGCATCAGAATCTCAAGTTTCTTCTGCTGAAGCAAAGAGACTTGTCAGGAAGCTATCCACCAATACATTCCGCACCTTGCTCAGTGGAATCTGGCACCACCACCACTCTTGA 1875 0.4747 MQGCIGVVHLSIYYSLIIKEVNASEDSTTTVVSPENGFVAPQPLTTPAIMGYDEQLKPCRNNLPESSNPRRVVNLISSLISISLSIRVFAGKWQLIRNKLEELYSGLVGADDDPSLSGVLPAILSTAEECSDLARRCTDLTYSGKLLMQSDLEVVFAKLHCHVKKLSEMYTKGVLTHSYALVVSKPGLGASKEDMRFFVRDLLTRMKVGDVSMKKQALINLHEVASEDDKYVKVIVEVGDVVHVLVDFLGSSELEIQQESAKVVSLIAGFDSYKGVLVGAGVVAPLVKVLECSSETGKVAAALCLQSLTENSDNAWSVSAHGGVTALLKICGGVDCRAELVCPACGVLRNLVGVEEIKRFMVDEGAVSSFIRLMRSRDEAIQVSSIEFLQSIASGDESLVKQIVVREGGVRVLLRLLDPKWPCSSKTREVVMRAIENLFFSWSSCVTILMSYGFVDQLMYYIRNGDVSVQELALKVAFRLCGTCEDAKKALGDAGFMADLVKFLNVKSFEVREMAAEALSGMVMVAKNRKRFVQDDESIALLLQLLDPEEGNSGNNKFLISVLMSLTHCNSGRKKIVSSGYAKNIERLASESQVSSAEAKRLVRKLSTNTFRTLLSGIWHHHHS* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0467 624 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 365 409 IPR000225 GO:0005515
Amo20g0467 624 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 62 620 - -
Amo20g0467 624 SMART arm_5 484 524 IPR000225 GO:0005515
Amo20g0467 624 SMART arm_5 354 394 IPR000225 GO:0005515
Amo20g0467 624 SMART arm_5 228 269 IPR000225 GO:0005515
Amo20g0467 624 SMART arm_5 270 310 IPR000225 GO:0005515
Amo20g0467 624 SMART arm_5 311 353 IPR000225 GO:0005515
Amo20g0467 624 SMART arm_5 396 440 IPR000225 GO:0005515
Amo20g0467 624 Gene3D - 198 612 IPR011989 -
Amo20g0467 624 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 366 IPR000225 GO:0005515
Amo20g0467 624 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 62 620 - -
Amo20g0467 624 SUPERFAMILY ARM repeat 192 591 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0467 Amo-Chr20 5893714 5896866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0467 199 473 U-box Gene Family AT2G23140 24.731 1.26e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0467 - - gmx:100783537 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0467 20 5893714 5896866 Amo10g0202 10 2064054 2067162 hybridization
Amo13g4377 13 139693842 139696068 Amo20g0467 20 5893714 5896866 PCT
Amo20g0467 20 5893714 5896866 Amo13g4377 13 139693842 139696068 PCT