Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0460 ATGGGGCGAGGAAAGATCGCGATTCGAAGGATCGACAATTCAACGAGCCGGCAAGTAACGTTTTCGAAGAGAAGAAATGGATTGCTGAAGAAAGCTAAGGAATTGTCCATTCTGTGTGATGCTGAAGTTGGATTGATTGTGTTCTCCAGCACTAGCAAGCTTTATGAATATGCAAGCACCAGCATGAAATCAATTATTGAACGCTACAACAAGCTTAAGGAAGAACATAATCAGCTGATGAATCCAGCTTCCGAAGTCAAGAGAGAAGCTGCAAGCTTGAGGCAACAACTGCAGCACTTGCAAGAATGCCACAGGAAACTGATGGGCGAAGAGCTTTCTGGACTGGGTGTTCAAGAACTACAAAATCTTGAAAATCAACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTCACAGATGAGATTAAAGAACTACACCAAAAGGTTTATGAAGCAAGGAGTACAAATGGAGAAAATGCAGCATCCAATCCTCCATACACTATCGGAAATGGATATGACTTACTTGCACCTATCAGTCTCCAACTAAGCCAGCCAGAGACTCAATACACTGAACCACCTGCCAAAGCAATGAAACTGGGTACTGGTAACTACAAAGAGGGAGCCAATATCCTGAATCAAACACAATAA 660 0.4212 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTSKLYEYASTSMKSIIERYNKLKEEHNQLMNPASEVKREAASLRQQLQHLQECHRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQIFTDEIKELHQKVYEARSTNGENAASNPPYTIGNGYDLLAPISLQLSQPETQYTEPPAKAMKLGTGNYKEGANILNQTQ* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0460 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 151 205 - -
Amo20g0460 219 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Amo20g0460 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo20g0460 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo20g0460 219 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 152 - -
Amo20g0460 219 ProSiteProfiles K-box domain profile. 83 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo20g0460 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 152 - -
Amo20g0460 219 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Amo20g0460 219 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Amo20g0460 219 Coils Coil 83 103 - -
Amo20g0460 219 Pfam K-box region 84 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo20g0460 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo20g0460 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo20g0460 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo20g0460 219 PANTHER MADS-BOX TRANSCRIPTION FACTOR 151 205 - -
Amo20g0460 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo20g0460 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0460 Amo-Chr20 5719414 5729674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0460 1 204 MADS-box Gene Family AT2G14210 57.872 3.46e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo20g0460 K-box 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0460 K09264 - gmx:100808145 322.013