Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0447 ATGGCTATGGAGAACAACTATTCATACCCGTCTTACCCAGACTCAGGGGACTCTTCTCCGCGCTCAAGAGAGATCGACTTCGAGAACCCTCCTCCATGGGACGACCAACAACCGCCACCCAACTACAAGGCCAAGTTCATGTGCAGTTACGGCGGCAAGATCCAGCCTCGCACCCACGACAACCAGCTCTCCTACGTCGCCGGCGAGACCAAGATCCTCGCCGTCGACCTCAACATCAAGTTTAACGCCATGATCGCCAAGCTCTCCGCCCTCTGCGGCTGCGACCCGAAGGACCTCTCCTTCAAGTACCAGCTCCCTGGTGAGGATCTTGACGCTCTCATCTCCGTCACTAATGATGACGACCTTGACCACATGATGCACGAGTACGATCGACTCTACCGTGCTTCCGCTAGACCTGCCCGCATGCGATTATTCCTCTTCCAAGCCAACACTACTAACACTAACAGTAATAACAACCTTCCTCCCTCTTCTGATAACCGTCTTGACCCGGTCCAACCAGACCCGCTCAAACCGAATCCCAACGTGGATTATCTCTTTGGTCTTGAGAAGAATACTGCTGTTAATGTTGCTCCTCAGCAGCTTCAGCCACCTGCGCCGTCACCGCCGGCGGCTCCTGTCCCGGTGAAGTTCCATGATACGGTGCCGGAGCCTGTCCCGCCGCCGCCGGAGTACCAACAGAGAGTTGCCGTTAACACCCCCGATCGTGTCATTGGATCGGATCCGAACTTGAGCCACCCGCTGGAAGTTCAGAGGCAGTTTCAGAGGATGCAAATTTCGGAAAGCGATCAAGCTGCTGCGTATCGGAGGAAGAGCGAGGAAGTTCTCGCCGGGAATTATGCCCCTACCGGCGGTGACTATTACGCTCAGAAAGCTCCTCCGGCGAGTGCGCCGTTACAACCTGGATATTGGCCTGATAAGCATGTTTCCAGCGAGGCATATCATCCGGCGGTATCGTCCGCTGCCGGCGGTGGTGAGCCGCCGGTTTATGTGATTCCGGCGCATGGAGCGTTCTATCATCACGCGCCTGTAGTTCGTCCACAGACTCCTCCACCGACAACGCAGGGTTACTACGCGGTGCAGCGAATGGCTTCCGACGGTTACCGCGAAGCTCCGTTGTACGGCGGCGTGCCGCCACATAAGCCGCCGTTTTCTTCGGCTGCTCCGGCGAACATGGCACCACCACAGCCGCTTAAAGGTCCCGGTTATACGGAAGGATTCGGGGTGGTTAGGCCAGTTGGGATGCAGGATAATACCGGTGCGGCTTACGCACAGGTGGCGTACGATAGTGGAAGTGGAAGACAGGTTTACTATACTGCGCCGGGTGGTGGTGTCATGCACGCGCCGCCGTACCAAGGGGTTACTCAGGCGCTAACCGGTGGTGGGGTGTCGTTGGGTCAAGATGGTAAGGTCATAAGCAAGGTTTCTCAAGGTTCTGTGTGA 1461 0.5674 MAMENNYSYPSYPDSGDSSPRSREIDFENPPPWDDQQPPPNYKAKFMCSYGGKIQPRTHDNQLSYVAGETKILAVDLNIKFNAMIAKLSALCGCDPKDLSFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPARMRLFLFQANTTNTNSNNNLPPSSDNRLDPVQPDPLKPNPNVDYLFGLEKNTAVNVAPQQLQPPAPSPPAAPVPVKFHDTVPEPVPPPPEYQQRVAVNTPDRVIGSDPNLSHPLEVQRQFQRMQISESDQAAAYRRKSEEVLAGNYAPTGGDYYAQKAPPASAPLQPGYWPDKHVSSEAYHPAVSSAAGGGEPPVYVIPAHGAFYHHAPVVRPQTPPPTTQGYYAVQRMASDGYREAPLYGGVPPHKPPFSSAAPANMAPPQPLKGPGYTEGFGVVRPVGMQDNTGAAYAQVAYDSGSGRQVYYTAPGGGVMHAPPYQGVTQALTGGGVSLGQDGKVISKVSQGSV* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0447 486 MobiDBLite consensus disorder prediction 1 40 - -
Amo20g0447 486 CDD PB1_UP2 47 147 - -
Amo20g0447 486 PANTHER OS05G0427100 PROTEIN-RELATED 5 480 - -
Amo20g0447 486 Pfam PB1 domain 59 148 IPR000270 GO:0005515
Amo20g0447 486 Gene3D - 64 149 - -
Amo20g0447 486 MobiDBLite consensus disorder prediction 152 166 - -
Amo20g0447 486 SMART PB1_new 58 149 IPR000270 GO:0005515
Amo20g0447 486 MobiDBLite consensus disorder prediction 152 176 - -
Amo20g0447 486 MobiDBLite consensus disorder prediction 1 18 - -
Amo20g0447 486 SUPERFAMILY CAD & PB1 domains 59 157 - -
Amo20g0447 486 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 5 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0447 Amo-Chr20 5525318 5527215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0447 43 155 MAP Kinase Kinase Kinase AT3G46920 42.982 5.80e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0447 - - adu:107480527 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0447 20 5525318 5527215 Amo20g0447 20 5525318 5527215 ECH
Amo13g4003 13 132756922 132758798 Amo20g0447 20 5525318 5527215 PCT
Amo20g0447 20 5525318 5527215 Amo13g4003 13 132756922 132758798 PCT