Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0439 ATGTTTGTTACTTTTCAGTTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTGAAAGCTCTTGCAAAATATGCCTTCGGTATGGGATTTACTCAGGTTGTATTATCTACTTTAGCATTTGCTGCTTTTGAACTCCCACCAAATGGGGCTATTGGAACAAAAATTTTGGAATTCCTTTTCCATTCAAGGCCAGATCTGGTGAATATTAGAAGTATTGATGAAGCTGTGGTAATTGCTGCTGCTCTCTCTCTGTCATCTTCTGCATTTGTTCTACAGCTTCTTGCAGAGAAGGGTGAGCTACCTACAAGATTTGGTTCAGCAACTCTGGGAATACTTTTATTGCAGGACATAGCTGTTGTCCCTCTTCTAGTCATTCTTCCAATACTAGAGAGCCAGAATCTGGCTAAGGAAAGCATTTGGCCAATGCTTGCTCAAGAAAGTTTAAAGGCATTAGGTGGATTGGGTCTGCTATCTTTTGGGGGAAAATACATTCTTAGAAGAGTATTTGAGGTTGTTGCAGATGCAAGGAGCTCAGAGGCCTTCGTTGCACTTTGCTTGCTGACTGTTGCTGGAACTTCACTTGTCACGCAGCATTTGGGTTTTAGTGATACGCTTGGGGCATTTTTAGCTGGGGCACTTTTAGCAGAGACAAATTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGCTTGCTTATTGGATTATTTTTCCTAACTACAGGGACTTCCATTGACATGCAGCTTCTTATGCGAGAGTGGCCACATGTACTTGCACTCTTGGCAGGATTGATTTCTATCAAGACATTGATCATAACAGCAATCGGTCCTTGTGTTGGGCTTAGTTTGCAAGAAAGTGTGAGAATAGGATTGCTTCTATCCCAAGGAGGCGAGTTTGGATTCGTTGTTTTCTCCTTAGCAAATAGGCTTGGGGTGCTTCCACTTGAGCTCAACAAGTTGCTCATAATTGTTGTTGTATTGTCAATGGCATTAACCCCATTTCTTAATGAAGCTGGAAGAAGGGCTGCTGATTTTATTGATGGAAAATTCGATGTGGAGTTTAAAGCTTCAGAGATGGTCAACTTTGGTGTCACTGAACCTGTTGTTATAGTTGGATTTGGACAAATGGGCCAGGTCCTTGCAAATTTCCTTTCCAATCCGTTGGCTTCAGGAGGAGACAGTGATGCTGCAGGATGGCCTTATGTGGCTTTTGATCTTGACCCCGCACTAGTAAATGCTGCTAAAAAAGCCGGCTTTCCAATTCACTATGGGGATGGATCACATCCTGCTGTTCTTCAGTCGGCCGGTATCTCTTCTCCAAAAGCTATTATGGTTATGTTCCCCGGCAAGGAAAAGACAGCGGAAGCTGTTCAGAGGCTACGGTTTACTTACCCTGCAATCCCAATCTATGCCAGAGCTAAAGATCTTGAGCATCTTTTAGATCTGAAGAAAGCAGGTGCAACAGATGCCGTTTTGGAAAATGCAGAGACTAGCTTACAGCTGGGTTCTAAGCTTCTGAAAGGTTTCGGAGTGATGTCGGATGACCTAGCATTTTTGAGTCAGCTCATTAGAGATTCCATGGAACTACAGGCTCAAGAAGCAGCCAGCTTCGCCAAATGCGATGAATTAAATATGACAAAACAACTGCAGGTGAGAGTTGGTGACTCAATTGAGGGACATGCACCTATGCCAACTACTTCATCAGAATTGGACCAGCCGCATCAAGTTTCCCTCCCTAGAATTCAGCCAGTTGCGGAACAGCCAGTTGTAGAACAAGACGATGAACTCGATCAAACTGAAAGAAGGCGCTGA 1818 0.4362 MFVTFQLFEMGLELSLARLKALAKYAFGMGFTQVVLSTLAFAAFELPPNGAIGTKILEFLFHSRPDLVNIRSIDEAVVIAAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPILESQNLAKESIWPMLAQESLKALGGLGLLSFGGKYILRRVFEVVADARSSEAFVALCLLTVAGTSLVTQHLGFSDTLGAFLAGALLAETNFRTQIEADIRPFRGLLIGLFFLTTGTSIDMQLLMREWPHVLALLAGLISIKTLIITAIGPCVGLSLQESVRIGLLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPFLNEAGRRAADFIDGKFDVEFKASEMVNFGVTEPVVIVGFGQMGQVLANFLSNPLASGGDSDAAGWPYVAFDLDPALVNAAKKAGFPIHYGDGSHPAVLQSAGISSPKAIMVMFPGKEKTAEAVQRLRFTYPAIPIYARAKDLEHLLDLKKAGATDAVLENAETSLQLGSKLLKGFGVMSDDLAFLSQLIRDSMELQAQEAASFAKCDELNMTKQLQVRVGDSIEGHAPMPTTSSELDQPHQVSLPRIQPVAEQPVVEQDDELDQTERRR* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0439 605 Pfam Sodium/hydrogen exchanger family 2 338 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Amo20g0439 605 ProSiteProfiles RCK N-terminal domain profile. 369 501 IPR003148 GO:0006813
Amo20g0439 605 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 370 508 IPR036291 -
Amo20g0439 605 Gene3D - 369 539 - -
Amo20g0439 605 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 3 561 - -
Amo20g0439 605 MobiDBLite consensus disorder prediction 559 605 - -
Amo20g0439 605 MobiDBLite consensus disorder prediction 563 577 - -
Amo20g0439 605 Pfam TrkA-N domain 370 493 IPR003148 GO:0006813
Amo20g0439 605 Gene3D - 3 345 IPR038770 -
Amo20g0439 605 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 3 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0439 Amo-Chr20 5486505 5491421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0439 3 557 Inorganic Solute Cotransporters AT4G04850 78.378 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0439 - - aprc:113858933 887.1