Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0436 ATGGAGATTTCATCTGAATTGGGTATAATGGAGGATCCTAATAGCTTTCTCTGGCACTTAAGCTCTATTGATACTTGTGCTACTACCTTAGCTGTTTTTGGAGATAGCTTGCAAAAGAATAATCCATTATTCTGTAACTCAAACTTGATGAACTCCAAGATTTCCATGATGGAAACTACTACTTCACCTACTACTACTATAATTGAAAGACCAGCAAAACAGCTTAGAAGTAACAACACTAGTAATTGGAGTAGTCACATTAACAAGACACCAGAGTCACACTTTGTTGGTTCTTGCTCAAATAATCTTCTCTCCTTTGTTGACAACACAAATCATCATCATCATCAATTGGGGTTAGTAATGAAGCCTAAGGTTGAGATTATGAGTAGTAGTCCTAACAACATAGATACTCAAGGAACAACCTTGTTGGGGAATAATAATAATCATCATCATAATCATGAAAACTATCTATTCAAAGAATCATCATGCCATGAGGCTAAGAACTTTGGGCAACGTCCTAAGCTTTCTTCTCATCAACCTCATGATCACATCATTGCTGAGAGGAAGCGCAGAGAGAAGCTCAGCCAGCGCTTCATTGCTTTATCTGCCCTTGTTCCTGGCCTCAAAAAGATGGATAAAGCTTCTGTTCTGGGAGATGCTATAAAGTACTTGAAACAAATGCAAGAAAAAGTGAGTGCTCTTGAGGAGGAACAGAAAAAGAAGAAGACCGTGGAATCAGTGGTAATGGTGAAGAAATCTCAGTTATGTAATGATGATGAAGACTCTTGCTCTTCAGAGACTGAGCCACTACCCGAAATTGAAGCAAGATTTTGCGAAAGAAATGTGCTAATAAGAGTTCACTGCGAGAAGAAAAAGGGTGTTATAGAAAATACAATCATTCAAATTGAGAAACTCCATCTCAAAGTCATCAATAGCAGCGTCTTAACATTTGGCAATTTTGCCCTTGATATAACCATCATTGCTCAGATGGATATGGAATTTTCCATGACAGTGAAGGAACTTGTTAAGAATCTACGTTCAGCGTTTTCAACTTTCATGTGA 1062 0.3785 MEISSELGIMEDPNSFLWHLSSIDTCATTLAVFGDSLQKNNPLFCNSNLMNSKISMMETTTSPTTTIIERPAKQLRSNNTSNWSSHINKTPESHFVGSCSNNLLSFVDNTNHHHHQLGLVMKPKVEIMSSSPNNIDTQGTTLLGNNNNHHHNHENYLFKESSCHEAKNFGQRPKLSSHQPHDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQMQEKVSALEEEQKKKKTVESVVMVKKSQLCNDDEDSCSSETEPLPEIEARFCERNVLIRVHCEKKKGVIENTIIQIEKLHLKVINSSVLTFGNFALDITIIAQMDMEFSMTVKELVKNLRSAFSTFM* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0436 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 240 IPR036638 GO:0046983
Amo20g0436 353 Coils Coil 217 244 - -
Amo20g0436 353 SMART finulus 184 233 IPR011598 GO:0046983
Amo20g0436 353 Pfam Helix-loop-helix DNA-binding domain 183 228 IPR011598 GO:0046983
Amo20g0436 353 Gene3D - 177 251 IPR036638 GO:0046983
Amo20g0436 353 CDD bHLH_AtNAI1_like 182 253 - -
Amo20g0436 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
Amo20g0436 353 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 6 352 - -
Amo20g0436 353 PANTHER BHLH TRANSCRIPTION FACTOR 6 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0436 Amo-Chr20 5441663 5444057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0436 181 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 59.444 1.57e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo20g0436 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0436 - - aip:107624263 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0436 20 5441663 5444057 Amo20g0436 20 5441663 5444057 ECH