Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0434 ATGTTCGCCGGAATAATTCTCTGCCACGGTTCGCCGCAGCCTGTTTTTCTTCTTCTTTTTCTTCTTAATGCTCTGTTTTTCCTCTGTTTTGTTACCTCCTCTCATGAAACTGAGCTTCAAATTCTTTTGAGTTTCAAGTCTTCTATTCAAAGTTCAAAACCAAATGTTTTCAGTTCATGGAACCAAGCGAATTCTCACTGCAACTTCACCGGGATTGTGTGCTCAGATGGTTCTGTCTCAGAAATCAACCTTGCAAGTAAAGCATTAGTTGGAACTCTTCCGTTTGACTCAATCTGTGAGCTTCAAATGCTGAAGAAAATCTCTGTAGAGTCCAATTTATTGCATGGGATCATCAGTGATGACTTGAAAAAGTGCAAGAATTTGAAATACTTGGATTTGGGTGGGAATTCATTCACTGGTTCGGTTCCTGATTTGTCAACTCTGAACAAGTTAGAGTACTTGAATTTGAATGCAAGTGGAATCTCTGGTGCATTTCCATGGAAATCATTGGAGAATTTGACAGAACTCACATTCTTGAGCGTTGGTGATAACCTTTTGGAGAAAAGCAAGTTCCCTTTGGAGGTTTTAAAGCTTTCAAATTTGTATTGGCTTTACCTCACAAATTGCAGCATCACTGGGAATATTCCAATTGGTATTGGGAATCTCACAAAGCTTGAGAATCTTGAGCTTTCAGATAACCACTTAACTGGTGAGATTCCAAAAGATATTGTGCATCTTCAAAGCCTAAGGCAACTTGAGCTTTATGATAACTTCTTGAGTGGAAAAATCCCTGTTGGATTTGGTAACCTCACAAATCTTGAATATTTTGATGCTTCTAATAACCAGCTTGAAGGTGATCTTTCTCAGATAACTTCATCATTGAAAAGCCTTTCATCATTGCAGCTTTTTCAGAACAAGTTATCAGGTACAATTCCAGAAGAGCTTGGAGAATTGAAAAGCCTCAAGGAACTTTCTCTCTATGGTAACATGCTCACTGGTCCTCTTCCTCAGAAGCTTGGTTCCTATGGAGGCATGGATTACATTGATGTTTCGGATAATTCGCTTTCCGGTTCCATACCGCCTGATATGTGCAAGAACAACCATATGACAGACTTCTTACTTTTGAACAACAGCTTCACTGGAACCATACCTGAAACATATGCTAATTGTTCTTCCATGATTCGCTTTCGTGCGAGTCGCAATTCGCTTTCTGGTGTTGTTCCTTCAGGTCTATGGGGCTTGCCAAATCTCCAAATTATTGATCTTTCAATGAATCATTTAGAAGGGTCAATAACTAGTGATATTGGCAAAGCAAAATCACTTGCTCAGATTTTCTTGTCTTACAATCAATTCTCAGGTGAGTTACCATTGGAAATCTCAGAAGCTTCTTCATTGGTATCAATTGAGTTAAATTCAAATCAAATTTCAGGACAAATACCAGATACTATTGGCAACTTGCATAGGCTAACTACTCTTAAATTGGACACGAACAATGTTTCTGGTGTTATACCATATTCTATCAGTTCTTGTGTCTCTCTTAATGAAATAAACTTTGCTGGTAATTCACTTTCCGGAGAAATACCGGTTGGTATTGGATCTTTGCTCACACTCAACTCATTGAACTTGTCCTCGAATAAACTTTCCGGCGAAATTCCATCAAGTTTATCTGCACAAAGGCTTAGCCTTCTTGATTTATCAAACAACCAGTTGTCTGGTCCCATACCAGATTCACTTGCTATCTCAGCTTACAAAGATGGTTTCATTGGGAATCCTCACTTATGCAGCCAGATTTTGGAGAATTTCAAGCCATGCTCCTTTGAATCCGGGGGCTCGAGGCGAATCAGAACACTTGTGCTGTGTTTGATTGCTGCATTAATGGTTATTGCTGTTTCTCTGTGCTATATCCTCTTCTTGAAACTGAAGCAGGACAAGTTTGAGAAGCCGGTTCTGAAGACTAATTCTTGGAATATCAAGCAGTATCACTTGCTAAACTTCAACCAGAGCGAGATCATTAATGGGATTAAAGCAGAGAACTTGATTGGCAAAGGAGGATCAGGGAATGTTTACAGGGTTGTGCTTAAAAGTGGTGAAGAATTCGCAGTCAAACACATATGGACTTCAAATCCGAGCGACCGGGGAAGTTATAGGAGCACCTCAGCAATGCTGAAAAGGTGTTCAAGGTCCTCATCAGAGTATGATGCAGAAGTGGCCACTCTCAGCTCCATAAGGCATGTCAATGTGGTGAAGCTCTATTGCAGCATCACAAGTGAAGATAGTAGCTTGCTTGTTTACGAATTCTTGCCGAATGGAAGCTTGTGGGATAGCTTGCATACAAGTAAGAAGGCTCAGATGGGGTGGGAGGTTAGGTATGAGATTGCACTGGGTGCTGCTAGAGGATTGGAGTATCTGCACCATGGTTGTGTTAGACCAGTTATACATAGAGATGTTAAGTCCAGTAACATCTTGCTTGATGAAGAATGGAAGCCAAGGATTGCTGATTTCGGTCTTGCTAAGATTGTTCATGGAGGAGCAGGAAATTTGACTCATGTCATTGCTGGAACACTTGGATACATGGCTCCTGAATATGCCTACACTTGTAAGGTGACAGAGAAGAGTGATGTTTATAGCTTCGGAGTAGTGCTAATGGAACTAGTAACAGGGAAGAGGCCTATAGAGGCAGAGTTTGGGGAGAGCAAGGACATTGTGTATTGGGTATGCAGCAATATGAGGAGCAAAGAGGAAGCTCTTGAGTTGGTGGATTCCACCATAGCAAAGCATTCCAGAGAAGATGCCATGAAGGTGTTGCGAATGGCAGCATTGTGCACAGCCAAGATTCCATCTTCAAGACCCTCCATGAGAATGGTTGTTCAAATGCTGGAAGAGGCAGACCCTTGTGCTCTTACCAACATAGTGATCACACATGATTAA 2928 0.4102 MFAGIILCHGSPQPVFLLLFLLNALFFLCFVTSSHETELQILLSFKSSIQSSKPNVFSSWNQANSHCNFTGIVCSDGSVSEINLASKALVGTLPFDSICELQMLKKISVESNLLHGIISDDLKKCKNLKYLDLGGNSFTGSVPDLSTLNKLEYLNLNASGISGAFPWKSLENLTELTFLSVGDNLLEKSKFPLEVLKLSNLYWLYLTNCSITGNIPIGIGNLTKLENLELSDNHLTGEIPKDIVHLQSLRQLELYDNFLSGKIPVGFGNLTNLEYFDASNNQLEGDLSQITSSLKSLSSLQLFQNKLSGTIPEELGELKSLKELSLYGNMLTGPLPQKLGSYGGMDYIDVSDNSLSGSIPPDMCKNNHMTDFLLLNNSFTGTIPETYANCSSMIRFRASRNSLSGVVPSGLWGLPNLQIIDLSMNHLEGSITSDIGKAKSLAQIFLSYNQFSGELPLEISEASSLVSIELNSNQISGQIPDTIGNLHRLTTLKLDTNNVSGVIPYSISSCVSLNEINFAGNSLSGEIPVGIGSLLTLNSLNLSSNKLSGEIPSSLSAQRLSLLDLSNNQLSGPIPDSLAISAYKDGFIGNPHLCSQILENFKPCSFESGGSRRIRTLVLCLIAALMVIAVSLCYILFLKLKQDKFEKPVLKTNSWNIKQYHLLNFNQSEIINGIKAENLIGKGGSGNVYRVVLKSGEEFAVKHIWTSNPSDRGSYRSTSAMLKRCSRSSSEYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWDSLHTSKKAQMGWEVRYEIALGAARGLEYLHHGCVRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVHGGAGNLTHVIAGTLGYMAPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPIEAEFGESKDIVYWVCSNMRSKEEALELVDSTIAKHSREDAMKVLRMAALCTAKIPSSRPSMRMVVQMLEEADPCALTNIVITHD* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0434 975 Gene3D Ribonuclease Inhibitor 28 95 IPR032675 -
Amo20g0434 975 Gene3D Ribonuclease Inhibitor 345 605 IPR032675 -
Amo20g0434 975 Gene3D Ribonuclease Inhibitor 96 344 IPR032675 -
Amo20g0434 975 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 19 969 - -
Amo20g0434 975 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Amo20g0434 975 Pfam Leucine rich repeat 199 257 IPR001611 GO:0005515
Amo20g0434 975 SUPERFAMILY L domain-like 353 579 - -
Amo20g0434 975 Gene3D Transferase(Phosphotransferase) domain 1 767 968 - -
Amo20g0434 975 ProSiteProfiles Protein kinase domain profile. 674 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0434 975 ProSitePatterns Protein kinases ATP-binding region signature. 680 702 IPR017441 GO:0005524
Amo20g0434 975 SUPERFAMILY L domain-like 191 428 - -
Amo20g0434 975 Gene3D Phosphorylase Kinase; domain 1 658 766 - -
Amo20g0434 975 SUPERFAMILY Protein kinase-like (PK-like) 659 960 IPR011009 -
Amo20g0434 975 Pfam Protein kinase domain 677 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0434 975 SMART serkin_6 674 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0434 975 ProSiteProfiles Leucine-rich repeat profile. 127 149 IPR001611 GO:0005515
Amo20g0434 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Amo20g0434 975 SMART LRR_typ_2 294 318 IPR003591 -
Amo20g0434 975 SMART LRR_typ_2 486 509 IPR003591 -
Amo20g0434 975 SMART LRR_typ_2 414 438 IPR003591 -
Amo20g0434 975 SMART LRR_typ_2 222 246 IPR003591 -
Amo20g0434 975 SMART LRR_typ_2 173 198 IPR003591 -
Amo20g0434 975 SMART LRR_typ_2 270 293 IPR003591 -
Amo20g0434 975 SMART LRR_typ_2 534 558 IPR003591 -
Amo20g0434 975 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 19 969 - -
Amo20g0434 975 SUPERFAMILY L domain-like 35 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0434 Amo-Chr20 5425189 5429056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0434 25 975 Receptor kinase-like Gene Family AT1G09970 57.516 0.0 1047
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo20g0434 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0434 - - gmx:100811489 1389.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0434 20 5425189 5429056 Amo20g0434 20 5425189 5429056 ECH
Amo20g0434 20 5425189 5429056 Amo10g0002 10 118336 122013 hybridization