Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0432 ATGGGGCGAGGAAAGATCGCGATTCGAAGGATCGACAATTCAACGAGCCGGCAAGTAACGTTTTCGAAAAGAAGAAATGGATTGCTGAAGAAAGCTAAGGAATTGTCCATTCTGTGTGATGCTGAAGTTGGATTGATTGTCATGAAATCAATTATTGAACGCTACAACAAGCTTAAGGAAGAACATAATCAGCTGATGAATCCAGCTTCGGAAGTCAAGAGAGAAGCTGCAAGCTTGAGGCAACAACTGCAGCACTTGCAAGAATGCCACAGGAAACTGATGGGCGAAGAGCTTTCTGGACTGGGCGTTCAAGAACTACAAAATCTTGAAAATCAACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTCACAGATGAGATTAAAGAACTACACCAAAAGGTTTATGAAGCAAGGAGTACAAATGGAGAAAATGCAGCATCCAATCCTCCATACACTATCGGAAATGGATATGACTTACTTGCACCTATCAGTCTCCAACTAAGCCAGCCAGAGACTCAATACACTGAACCACCTGCCAAAGCAATGAAACTGGGTACTGGTAACTACAAAGAGGGAGCCAATATCCTGAATCAAACACAATAA 618 0.4191 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVMKSIIERYNKLKEEHNQLMNPASEVKREAASLRQQLQHLQECHRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQIFTDEIKELHQKVYEARSTNGENAASNPPYTIGNGYDLLAPISLQLSQPETQYTEPPAKAMKLGTGNYKEGANILNQTQ* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0432 205 Coils Coil 69 89 - -
Amo20g0432 205 SUPERFAMILY SRF-like 1 59 IPR036879 GO:0003677|GO:0046983
Amo20g0432 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo20g0432 205 ProSiteProfiles K-box domain profile. 69 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo20g0432 205 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Amo20g0432 205 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Amo20g0432 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo20g0432 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo20g0432 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo20g0432 205 Pfam K-box region 70 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo20g0432 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 134 191 - -
Amo20g0432 205 CDD MADS_MEF2_like 2 62 IPR033896 GO:0000977|GO:0045944
Amo20g0432 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 138 - -
Amo20g0432 205 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 138 - -
Amo20g0432 205 PANTHER MADS-BOX TRANSCRIPTION FACTOR 134 191 - -
Amo20g0432 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0432 Amo-Chr20 5382624 5392451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0432 1 190 MADS-box Gene Family AT2G14210 53.191 1.19e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo20g0432 K-box 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0432 K09264 - gmx:100808145 288.885