Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0423 ATGCTAAGAGAACAAAGAAAACTTATTAACCAGAAGAAAACAATGAGTTCAGAAGATTGCCTTGGTTGGGCTGCAAGAGATGTATCTGGACATCTCTCCCCATACAAATTCAATCGCAGGGCTGTAGGAGATGATGATGTTTATGTTAAGATCACACACTGTGGTATTTGTTATGCTGATATCGCTTGGACAAGGAATAAACTTGGTGACTCCAAGTACCCTGTTGTGCCAGGCAAGGTTGGTTCCAATGTCAAGCGTTTCAGTGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCATGCCGCGACTGCGAGTACTGCGATGATGGACTAGAACATCAGTGCAGTAAGGGAGTTTTTACCTTTAATGGGGTTGATTCTGATGGTACAATCACAAAGGGAGGATACTCCAATTTCATAGTAGTCCATGAAAGGTATTGTTTTAAGATACCAAAAAGTTATCCATTGGCTTCAGCAGCACCTTTGCTGTGTGCCGGAATCACTGTTTATTCGCCGATGATTCGTTACAAGATGAATGAGCAGCCGGGAAAATCTTTAGGAGTGATTGGCCTTGGTGGACTTGGTCACATGGCTGTTAAATTTGGAAAGGCTTTTGGTTTGAATGTAACAGTTTTCAGCACCAGCATATCTAAGAAAGATGAGGCCCTCAATTTGCTTGGTGCAGATAACTTTGTGATTTCCTCTGATCAAGACCAAATGAAAGGATTAACAAAGACATTAGACTTTATAATTGACACAGCATCTGGTGATCATCCTTATGATCCTTACATGGCACTTCTGAAAACATTTGGTATCTTAGTTGCAGTTGGGGCTGGAACTGAAATCAAGTTCAGCCCTAGAAGCCTATTTTTTGGATTGAGGAGTATTTCTGGAAGTATTGTAGGAGGTACAAAAGATATACGGGATATGATTGATTTATGTGTTGAAAAGGAGATTTATCCAAAGATTGAAGTAATTCCTATTGAGTATTGTAATGAAGCTATTGAAAGGGTCATAAAAAGTGACGTCAAGTATCGGTTTGTGATTGATATTGAAAACTCCTTAAATAATGAATACTTTGTTACTAAGAAGAAAACAATGAGTTCAGAAGATTGCCTTGGTTGGGCTGCAAGAGATGCATCTGGACATCTCTCACCATACAAATTCAATCGCAGGGCTGTAGGAGATGATGATGTTCATGTTAAGATCACACACTGTGGTGTTTGTTATGCTGATATCGTTTGGACAAGGAATAAGATTTGCAAGGTTGGTTCCAATGTCAAGCGTTTCAATGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCATGCCGCGACTGCGAGTATTGCGACGATGGACTAGAACATCAGTGCAGTCAGGGAGCAGTTTTTACCTTTAATGGGGTTGATTCTGATGGTACAATCACAAAGGGAGGATACTCCAATTTCATAGTAGTCCATGAAAGCAGCACCTTTGCTGTGTCCGGAATCACTGTTTATTCGCCGATGATTCGCCACAAGATGAATGAGCAGCCGGGAAAATCTCTAGGAGTGATTGGCCTTGGTGGACTTGGTCACATGGCTGTTAAATTTGGAAAGGCTTTTGGTCTGAATGTAACAGTTTTCAGCACCAGCATATCTAAGAAAGATGAAGCCCTCAATCTGCTTGGTGCAGATAACTTTGTAATTTCATCTGATGAAGACCAAATGAAAGCATTAACAAAAAAAACACTAGACTTTATAATTGATACAGCATCTGGTGATCATCCTTTTGATCCTTACATGGCACTTCTGAAAACACTTGGTATTCTAGTAGTAGTTGGGGCTGCAAATGAAATCAAGTTCAGCCCTGTAAGCCTATTCTTCGGATTGAAGACTATTTCTGGAAGTTCTGTGGGAGGTACAAAAGATATACAAGGGATGATTGATTTATGTGCTGAAAAAAAWATTTACCCAAAGATTGAAGTAATTCCTATTGAGTATGCTAATGAAGCTATTGAAAGGAAAATAATGATGAATTCCGAAGGTGGCAATGAAGATTGCTTAGGTTGGGCAGCAAGAGATGCATCTGGTGTTCTCTCACCATACAAATTCAGTCGCAAGGCTGTAGGAAACGATGATGTTTATGTTAAGATCACACACTGCGGTATTTGTTATGCTGATGTAGTTTCCACAAGGAATTCATTTGGTGCCACAAATTACCCTGTTGTGCCCGGACATGAGATTGCAGGCATTGTGACAAAGGTTGGTTCCAATGTCCAACGTTTCAATGTTGGTGACCATGTTGGAGTAGGGACTTATGTTAACTCGTGCCGCGACTGCCYAAATTGCAATGCAGGACTTGAAATTCAATGTGGTAAAGGACGAGTTTTTACTTATGATAGTGTTGATTCTGATGGTACAATCACAAAAGGAGGATACTCCACTTTCATAGTAGTTCATCATAGGTATTGTTTTATGATACCAAAGAGCTATCCATTGGCTTCAGCAGCACCTTTGCTCTGTGCCGGAATCACTGTTTATTCGCCGATGATTCGTCACAATATGAATCAGCCTGGTAAATCTCTAGGAGTTATTGGCCTTGGTGGCCTTGGACATATGGCAGTTAAATTTGGAAAGGCTTTTGGTTTGGATGTAACAGTTTTCAGCACCAGCATATCTAAAAAAGATGAGGCCCTAAATCTTCTTGGTGCAGATAATTTTGTTGTTTCATCTGATCAAGAACAAATGAGTGCATTGGCTGAGTCATTAGACTTTATAATTGACACAGCATCTGGTAATCACCCTTTTGATCCTTACATGTTTCTTCTGAAAACATGTGGTGTCTTAGTCTTAGTTGGGGCTCCAAGTGAAATCAAATTAAGCCCAGGAAGCCTTATTGGTGGGATGAGAAGCATTTCTGGAAGTGCTGCAGGAGGCACAAAAGATACCCAAGAGATGATTGATTTGTGTGCTGAAAAGGAGATTTATCCAAATATAGAAGTGATTCCCATTGAATATGCTAATGAAGCTTTTGAGAGGATCATAAACAAAGATGTCAAGTATAGGTTTGTGATAGACATTGAAAATTCCCTCAAGTAA 3087 0.4014 MLREQRKLINQKKTMSSEDCLGWAARDVSGHLSPYKFNRRAVGDDDVYVKITHCGICYADIAWTRNKLGDSKYPVVPGKVGSNVKRFSVGDHVGVGTYVNSCRDCEYCDDGLEHQCSKGVFTFNGVDSDGTITKGGYSNFIVVHERYCFKIPKSYPLASAAPLLCAGITVYSPMIRYKMNEQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVFSTSISKKDEALNLLGADNFVISSDQDQMKGLTKTLDFIIDTASGDHPYDPYMALLKTFGILVAVGAGTEIKFSPRSLFFGLRSISGSIVGGTKDIRDMIDLCVEKEIYPKIEVIPIEYCNEAIERVIKSDVKYRFVIDIENSLNNEYFVTKKKTMSSEDCLGWAARDASGHLSPYKFNRRAVGDDDVHVKITHCGVCYADIVWTRNKICKVGSNVKRFNVGDHVGVGTYVNSCRDCEYCDDGLEHQCSQGAVFTFNGVDSDGTITKGGYSNFIVVHESSTFAVSGITVYSPMIRHKMNEQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVFSTSISKKDEALNLLGADNFVISSDEDQMKALTKKTLDFIIDTASGDHPFDPYMALLKTLGILVVVGAANEIKFSPVSLFFGLKTISGSSVGGTKDIQGMIDLCAEKXIYPKIEVIPIEYANEAIERKIMMNSEGGNEDCLGWAARDASGVLSPYKFSRKAVGNDDVYVKITHCGICYADVVSTRNSFGATNYPVVPGHEIAGIVTKVGSNVQRFNVGDHVGVGTYVNSCRDCXNCNAGLEIQCGKGRVFTYDSVDSDGTITKGGYSTFIVVHHRYCFMIPKSYPLASAAPLLCAGITVYSPMIRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLDVTVFSTSISKKDEALNLLGADNFVVSSDQEQMSALAESLDFIIDTASGNHPFDPYMFLLKTCGVLVLVGAPSEIKLSPGSLIGGMRSISGSAAGGTKDTQEMIDLCAEKEIYPNIEVIPIEYANEAFERIINKDVKYRFVIDIENSLK* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0423 1028 PANTHER - 18 356 - -
Amo20g0423 1028 PANTHER - 371 672 - -
Amo20g0423 1028 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 858 885 IPR029752 -
Amo20g0423 1028 Gene3D - 377 670 - -
Amo20g0423 1028 Pfam Alcohol dehydrogenase GroES-like domain 45 151 IPR013154 -
Amo20g0423 1028 Pfam Alcohol dehydrogenase GroES-like domain 398 494 IPR013154 -
Amo20g0423 1028 Pfam Alcohol dehydrogenase GroES-like domain 708 821 IPR013154 -
Amo20g0423 1028 Gene3D - 497 654 - -
Amo20g0423 1028 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 741 755 IPR002328 GO:0008270|GO:0016491
Amo20g0423 1028 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 491 652 IPR036291 -
Amo20g0423 1028 CDD CAD1 375 670 - -
Amo20g0423 1028 CDD CAD1 685 1022 - -
Amo20g0423 1028 SUPERFAMILY GroES-like 21 199 IPR011032 -
Amo20g0423 1028 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 828 991 IPR036291 -
Amo20g0423 1028 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 320 IPR036291 -
Amo20g0423 1028 CDD CAD1 22 351 - -
Amo20g0423 1028 SUPERFAMILY GroES-like 689 856 IPR011032 -
Amo20g0423 1028 SMART PKS_ER_names_mod 693 1021 IPR020843 GO:0016491
Amo20g0423 1028 PANTHER ALDEHYDE REDUCTASE 680 1027 - -
Amo20g0423 1028 PANTHER ALDEHYDE REDUCTASE 18 356 - -
Amo20g0423 1028 PANTHER ALDEHYDE REDUCTASE 371 672 - -
Amo20g0423 1028 Gene3D - 23 352 - -
Amo20g0423 1028 Gene3D - 686 1023 - -
Amo20g0423 1028 Pfam Zinc-binding dehydrogenase 865 987 IPR013149 -
Amo20g0423 1028 Pfam Zinc-binding dehydrogenase 525 648 IPR013149 -
Amo20g0423 1028 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Amo20g0423 1028 PANTHER - 680 1027 - -
Amo20g0423 1028 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 518 545 IPR029752 -
Amo20g0423 1028 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 187 214 IPR029752 -
Amo20g0423 1028 SUPERFAMILY GroES-like 375 498 IPR011032 -
Amo20g0423 1028 Gene3D - 838 993 - -
Amo20g0423 1028 Gene3D - 166 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0423 Amo-Chr20 5313818 5327845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0423 372 672 Monolignol Biosynthesis Gene Families AT1G72680 61.747 2.42e-127 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0423 K00083 - sind:105165970 609.757