Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0415 ATGGAAGAGGAAATCAAGTCAGAATTCAGAAAAGCCGGGTTCAACCTTGAGGAAGAAGAAGAAATACTGAACAAGTGTATGACTTTCTGCATCAACTACAGCCTCAGCCCTGCAGATCTCGTCTCAAACTGGGAGGTTTATTACCTCAACAGACAACTGAATGAGCCAACAGTGCAAAATGCTGAAATGGATGGCTTTTTGATGCACCTGCAGACTAACAAGAAAGAAGAAGTTATAAAGGAGGAATCTAATTTGCATAGTTACTCTATCAGAGATGTAGAAATGGTCTTAAATAATGATGATGATGCTAAGTTTAGTACTCCTGGGACTCCAACAAATAATGATGAACATCTTCGTTCACCTGCACACGAAGCAATGTCTCTAACAMATGGGAATATTTTATCTTCTGGAAAACCAACTGAGCTGGTGACACCCTTTTCAAAGCGAACTGATAGGTTTGCTGTGAAATTTAGCATCAACACAGTGCCTGATATAGAGAATGAAATACAAGTGCCGAATCATGAGATCGATGAGGAYGATGTTATTAGGAAAGTTATGCCTTGTAAAAGGTGTTCATTGGTGGTTCATRGMTCAGGGCCTAAACWTGGTTGCAGATTCATGCATGATAGGACAGAGGATAGGATGAATGTAATAGAAAATCGAATTCGCAAACATACAAGGGCCCTTGTTGCTTCTGGGATTTATGGAGAACCAACAGACCCTACAATTGCTTCACAGAGAAGCATTTTTGCTGTCGGTATGGTTTGCTGTGATGCAGAAGGCCGTCTAAATGACAAGTCTGTCATGCTGCAGGGCAGTGTTGAACATTCTGGAGGAGAATGTGTTCGTCTGGACTTGCAACGCTTAAGCCATTTTTCAATTTTCCCTGGGCAGGTTGTTGGTATTGAAGGGCATAATCCTAGTGGGCATTGCTTAGTTGCATCTAAATTGGTAGATTCTATACCACCTACCTCTGTTGCTGATGATAAGGATTTGAATCCAGCAAAGAAGCTAGCTATTGATAAAAGTCAACCAATTGATATTACTTCTAAAAAGACAGAGTTGTCCATGATTATTGCAGCAGGCCCTTTTACAACAACAGACAATTTATTTTTTGAGCCCCTTGTAGAATTGTTAGCATATGCAAAGCGAAGACAGCCACAGTTACTCGTATTGTTGGGACCATTTGTTGATTCTGAACACTCCAACATTAAGAAAGGAACCGTTGACAGAACCTTTGATGAAATATTTCATAACGACATCCTGAGCAAGTTACAAGATTATGTAGAATGTATGGGTGCTGCTGCACGTGTTCTTCTTGTACCATCTATACGAGATGCGAACCATGATTTTGTTTTCCCTCAGCCTGAACTGGATATCAATCTTCCTGATCTCAAATCTCAGATAATCAGTCTCACTAATCCTGGAATCTTTGAGGCAAACGAGGTCAAAGTTGGTTGCTGCAGTGTAGATATTCTCAAGCAGATCAGTGGGGAAGAGATATCACGAACTGCGCCAGATGGACAACCTACTGATCGCTTGAGTAGGCTTGCAAATCATATTCTTAGCCAGCAAAGCTTTTATCCACTTTATCCGCCGGCAGAAGGTGTTCCTTTGGATTTTTCTCTTGCACCAGAAGCCCTTCAACTCCCGTTGGTTCCAGATCTTCTTATCTTGCCTTCGGATATCAAGTACTTTGTCAAGGTGCTTAATGTGGGAAGTGAAGAGACAAACTGCAAGAAATGCATTGCTGTGAATCCAGGAAGACTAACAAAGGGAGAAGGAGGGGGTACTTTTGTAGAGCTTGATTATCGTGGTGGTTCCGACAAAATTAATGCATCAGTTATTGGCATATGA 1857 0.4114 MEEEIKSEFRKAGFNLEEEEEILNKCMTFCINYSLSPADLVSNWEVYYLNRQLNEPTVQNAEMDGFLMHLQTNKKEEVIKEESNLHSYSIRDVEMVLNNDDDAKFSTPGTPTNNDEHLRSPAHEAMSLTXGNILSSGKPTELVTPFSKRTDRFAVKFSINTVPDIENEIQVPNHEIDEDDVIRKVMPCKRCSLVVHXSGPKXGCRFMHDRTEDRMNVIENRIRKHTRALVASGIYGEPTDPTIASQRSIFAVGMVCCDAEGRLNDKSVMLQGSVEHSGGECVRLDLQRLSHFSIFPGQVVGIEGHNPSGHCLVASKLVDSIPPTSVADDKDLNPAKKLAIDKSQPIDITSKKTELSMIIAAGPFTTTDNLFFEPLVELLAYAKRRQPQLLVLLGPFVDSEHSNIKKGTVDRTFDEIFHNDILSKLQDYVECMGAAARVLLVPSIRDANHDFVFPQPELDINLPDLKSQIISLTNPGIFEANEVKVGCCSVDILKQISGEEISRTAPDGQPTDRLSRLANHILSQQSFYPLYPPAEGVPLDFSLAPEALQLPLVPDLLILPSDIKYFVKVLNVGSEETNCKKCIAVNPGRLTKGEGGGTFVELDYRGGSDKINASVIGI* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0415 618 Coils Coil 208 228 - -
Amo20g0415 618 Pfam DNA polymerase alpha/epsilon subunit B 358 568 IPR007185 GO:0003677|GO:0006260
Amo20g0415 618 Pfam DNA polymerase alpha subunit B N-terminal 21 226 IPR013627 -
Amo20g0415 618 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 615 IPR016722 -
Amo20g0415 618 Gene3D - 1 74 IPR043034 -
Amo20g0415 618 PIRSF DNA_pol_alpha_2 1 612 IPR016722 -
Amo20g0415 618 Gene3D - 508 614 - -
Amo20g0415 618 Gene3D - 339 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0415 Amo-Chr20 5209241 5214462 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0415 2 618 Core DNA Replication Machinery Family AT1G67630 58.065 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0415 K02321 - gmx:100795306 896.73