Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0401 ATGAAATTGGATGGGTGGGCCTTGGCTTCATATACAAGCTTTCACTTTTTCAATCTAGAGTTACATTATATCCATATCCAACAAGCAGAGAGCTTCACCATTGTCCATTGTCATTGTTTGGTTGGTTGCTACTTTCAAAGAGTTTTCTCCCTTCCACTCCCACTGCCAAAGCTGTTCCCTTTTTTCATCTGGATCTCTTTACTTGGTGACCAAATTCTTGAGAAGGGTTCTTTGGTTATGGCAATAGATCACTACTTCTCCAAGGAATGGAAAACCATCCCAAATTCGGCGACCGAGACAGAAAGCTGCAATGGCTGTTTTGATTGCAACATCTGCTTAGATTTCGCGCGAGAACCAGTAGTGACTTTATGTGGCCATCTTTACTGCTGGCCTTGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCCACCACAATGTCCTGTTTGCAAGGCTGATATATCCCACACCACAATGGTTCCTCTCTACGGCCGTGGCCAGGCTCCGTCTGATAGGAAGGCGTTGTCTCGTGATTTTTTCGTGCCCCCAAGGCCGCCTGCTTCCAGTGCTCAGTCTCTATTGACTGCAAATTCTCAGAGTGGACAACAGCTCCCATATCGAAATCCTTATCAGGGTCGGTATTTAAGCCCTGAGGAGGAAGATGCTGCCACTTCGCAGCTGCTCAATGGTGCTAGCATGAATCCAGGACCCCAACACCCTTCTTTGGTTGGAATGTTTGGGGAGATGTTTTATGCTAGAGTGTTTGGCAACTCGGAAAACTTGTATGCATACCCAAATTCTTATCAACCCATGACAAGTAATAATTCCAGATTGAGAAGGCAAGAGATGGAGGCAGATAAATGCTTGAACAGAATCTCAATTTTTCTCTTTTGTTGCTTCCTTCTGTGTCTCATTGTCTTCTGA 939 0.4515 MKLDGWALASYTSFHFFNLELHYIHIQQAESFTIVHCHCLVGCYFQRVFSLPLPLPKLFPFFIWISLLGDQILEKGSLVMAIDHYFSKEWKTIPNSATETESCNGCFDCNICLDFAREPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEPPQCPVCKADISHTTMVPLYGRGQAPSDRKALSRDFFVPPRPPASSAQSLLTANSQSGQQLPYRNPYQGRYLSPEEEDAATSQLLNGASMNPGPQHPSLVGMFGEMFYARVFGNSENLYAYPNSYQPMTSNNSRLRRQEMEADKCLNRISIFLFCCFLLCLIVF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0401 312 MobiDBLite consensus disorder prediction 182 216 - -
Amo20g0401 312 ProSiteProfiles Zinc finger RING-type profile. 109 156 IPR001841 -
Amo20g0401 312 SUPERFAMILY RING/U-box 105 168 - -
Amo20g0401 312 MobiDBLite consensus disorder prediction 193 214 - -
Amo20g0401 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 81 312 IPR045103 GO:0005783|GO:0006511|GO:0061630
Amo20g0401 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 81 312 - -
Amo20g0401 312 Pfam Zinc finger, C3HC4 type (RING finger) 109 155 IPR018957 GO:0046872
Amo20g0401 312 SMART ring_2 109 155 IPR001841 -
Amo20g0401 312 CDD RING-HC_AtRMA_like 107 157 - -
Amo20g0401 312 ProSitePatterns Zinc finger RING-type signature. 124 133 IPR017907 -
Amo20g0401 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 203 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0401 Amo-Chr20 5062088 5064562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0401 92 298 C3H Transcription Factor Family AT4G27470 41.743 7.55e-42 143