Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0387 ATGGAGAAGAAGCACCACCCTGGTGGTTCTACTTGCTCCACCAGAACTGAGAGAAAGTTCATTGAGAGAGAAAGAAGAAGCCAAATGAAGGCACTCTATTCCAACCTCAATTCTCTTCTCCCTCCTCAAACCTCAAGGGAGAGAATTTCTTCGCTGCCGGATCAGCTAGAGGAAGCCACAAACTACATAAAGAAGTTACAGGTGAAGCTGGAGAAAATGAAGGAAAAGAAGAACACATTATTAGGAACAATTCATCAAATACCAAATAATAGAGGCATATTAGGAAACGGTGGTAGTGGCAATAATAATAATGTTATTGGGATTAGATCTCCACAAATTGAGATCCAACAAATGGGATTCACCTTAATGGTTGTTCTCATAACTGCCTTGGATTCTCATTATTTCATGTTCATTGAGGCCATTCGTGTTCTTCATGAAGAAGGTGCAGATGTTGTTAGCGCCAGTTACAAGGTTGTTCAACATGCTGTTTTCCATACAATGCACTGTCAGGTAGGGGAGTATGGCAATGGAGCTGCTGCGAGGATATCAGAGAGACTGAAGAAGTTTGTGAATGATTCTACTTATTGTCCCTTTTAG 597 0.4104 MEKKHHPGGSTCSTRTERKFIERERRSQMKALYSNLNSLLPPQTSRERISSLPDQLEEATNYIKKLQVKLEKMKEKKNTLLGTIHQIPNNRGILGNGGSGNNNNVIGIRSPQIEIQQMGFTLMVVLITALDSHYFMFIEAIRVLHEEGADVVSASYKVVQHAVFHTMHCQVGEYGNGAAARISERLKKFVNDSTYCPF* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0387 198 Pfam Helix-loop-helix DNA-binding domain 15 67 IPR011598 GO:0046983
Amo20g0387 198 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 87 IPR036638 GO:0046983
Amo20g0387 198 Coils Coil 56 83 - -
Amo20g0387 198 PANTHER TRANSCRIPTION FACTOR BHLH162 11 192 - -
Amo20g0387 198 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 66 IPR011598 GO:0046983
Amo20g0387 198 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 192 IPR015660 GO:0003700|GO:0006357
Amo20g0387 198 Gene3D - 9 91 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0387 Amo-Chr20 4859932 4861659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0387 1 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 45.833 5.72e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo20g0387 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0387 - - gmx:100784418 203.371