Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0376 ATGGCACTAAGCCAATTGGGCACCACATACAAGAGGTACATGATCATAATCAAGAATGGAGAAGCAGAAGGAGGAAGGGGGAGTAAAGTGCCCTCGATCCTCTCATCGCCAAGGTACTTCTGCAAAGCCTGCAAGAGATACTGGACAATAGGTGGAACCCTCAGAAACGTTCCTGTTGGCGGCGGTTCCAGAGCACGTCGTCTCAACCACCCTAACACCACTCCTTCTCCTTCATCAGATCAACAACAACAGTGA 255 0.498 MALSQLGTTYKRYMIIIKNGEAEGGRGSKVPSILSSPRYFCKACKRYWTIGGTLRNVPVGGGSRARRLNHPNTTPSPSSDQQQQ* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0376 84 Pfam Dof domain, zinc finger 35 66 IPR003851 GO:0003677|GO:0006355
Amo20g0376 84 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 76 IPR045174 GO:0003700|GO:0006355
Amo20g0376 84 MobiDBLite consensus disorder prediction 59 84 - -
Amo20g0376 84 MobiDBLite consensus disorder prediction 67 84 - -
Amo20g0376 84 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0376 Amo-Chr20 4763943 4764312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0376 34 73 C2C2-Dof Transcription Factor Family AT1G21340 65.000 3.62e-14 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo20g0376 zf-Dof 7.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0376 - - adu:107468324 74.3294