Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0373 ATGGGAGATAGTAGTTGGGGCGAGAGAAAGAGCATGAAGTACAATGAAGAAGAAGAAGAGGAAGATGAAGAATACCAAGACGAAGATGAAGGAAAAAAGAAGAGAGTAGTAGTGGTGAGCAACAAGAGAGCATCGTCATCATCATGTACATGTCAAGTGGATGGTTGCAATGCAGATCTAAGCATTGCAAAGCAGTATCACAAGCGCCATAAGGTGTGTGAGTACCATGCCAAGGCTCACTCTGTTCTCATCTCTCAACAACACCAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTATCAGAATTTGATGACTCAAAAAGGAGTTGTAGAAGGCGTTTAGCTGGACACAATGAGAGGCGTCGCAAAAATTCATCAGATTGCCAAGGATAA 396 0.4318 MGDSSWGERKSMKYNEEEEEEDEEYQDEDEGKKKRVVVVSNKRASSSSCTCQVDGCNADLSIAKQYHKRHKVCEYHAKAHSVLISQQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNSSDCQG* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0373 131 Gene3D - 41 112 IPR036893 GO:0003677|GO:0005634
Amo20g0373 131 Coils Coil 15 35 - -
Amo20g0373 131 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 125 IPR044817 GO:0003677
Amo20g0373 131 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 5 125 - -
Amo20g0373 131 SUPERFAMILY SBT domain 50 128 IPR036893 GO:0003677|GO:0005634
Amo20g0373 131 MobiDBLite consensus disorder prediction 1 33 - -
Amo20g0373 131 ProSiteProfiles Zinc finger SBP-type profile. 48 125 IPR004333 GO:0003677
Amo20g0373 131 Pfam SBP domain 51 124 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0373 Amo-Chr20 4736316 4737421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0373 43 128 SBP-box Gene Family AT2G33810 74.419 6.53e-43 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo20g0373 SBP 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0373 - - adu:107468295 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0373 20 4736316 4737421 Amo20g0373 20 4736316 4737421 ECH
Amo18g1630 18 32441406 32442710 Amo20g0373 20 4736316 4737421 ECH
Amo18g0979 18 15840992 15842253 Amo20g0373 20 4736316 4737421 ECH