Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0368 ATGGCATCTTCTTCTCCTTCTTCTTCAGCTTCTCGTGAGGGACACTACAGAGGGGTTAGGAAGAGGCCATGGGGACGTTACGCTGCTGAGATACGCGATCCTTGGAAGAAGACACGTGTATGGCTTGGTACCTTCGATACTCCTGAAGAAGCCGCCCTAGCTTACGACGGTGCCGCGCGTTCTCTCCGTGGTGCTAAGGCCAAGACTAACTTCCCCCCGGCTCCGGTCGCCGCTGCCGGAGGAATCTGTCTCGACCTCAACGTTAACGCTCCTAACTCTGATCATCATCGCTGGCCCTCCGTACCGGTTCGCGCCGGCGTTGGCGGTGGTGGAATCTTCGGCGAGTTTCTCCACACTCGCGTTCTCAAGGACGTTGATCTGGCTCATCAACCGCATCAGCCGCCTCCGCCACATCCGATTCATCATGCGGCGGCGTTAGCAGCTCATCACCACAGACGCGGCGAGGTGACAGTAGCGGTTGCCGGAGGAGGAGTGGAGCAGGTGGCGGGGAGTGGTTCAACGGCATCGTATCTAGGGCTTGTTCGGCGCGGGATCCCGATCGATCTGAACGAGCCTCCACCTTTGTGGCTTTGA 594 0.5892 MASSSPSSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVAAAGGICLDLNVNAPNSDHHRWPSVPVRAGVGGGGIFGEFLHTRVLKDVDLAHQPHQPPPPHPIHHAAALAAHHHRRGEVTVAVAGGGVEQVAGSGSTASYLGLVRRGIPIDLNEPPPLWL* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0368 197 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Amo20g0368 197 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Amo20g0368 197 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Amo20g0368 197 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 131 - -
Amo20g0368 197 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Amo20g0368 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 10 131 - -
Amo20g0368 197 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Amo20g0368 197 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Amo20g0368 197 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Amo20g0368 197 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0368 Amo-Chr20 4694445 4695751 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0368 7 197 AP2-EREBP Transcription Factor Family AT1G28360 45.411 5.64e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo20g0368 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0368 - - aip:107624305 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0368 20 4694445 4695751 Amo20g0368 20 4694445 4695751 ECH