Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0366 ATGGCTCCCAGGGATAAGACGGCTGCCGTTAAGGTTAACGGCAAAGGTAGCGCCGGCGTTAAAGAGGTACATTTTAGGGGTGTTAGGAAGAGGCCATGGGGAAGGTACGCTGCTGAGATCAGAGATCCAGGCAAGAAGAGCCGCGTTTGGCTCGGCACCTTCGACACCGCCGAGGACGCAGCGCGTGCATACGACGCCGCCGCTCGAGAGTTCCGTGGCCCAAAGGCTAAGACCAACTTCCCCTTTCCTGATTCCGACGACAACAACAATAACAACATCGTCGTCGTTAAGAACAACAACCGCAGCCCCAGCCAGAGCAGCACCGTCGAATCTTCCAGCCGGGACCGCGACTCCTACTCCGCCGCTGCCACCGCAGCAGCTGATTCGTCGCCCTTAGACCTTAACTTAGCCCCCGCTGGAGCTGGATTCTCCGGATCCATTCGGTTCCCATTCCAGCAGCCGTTCGCGGTGTTTCCCTGCCGGATGCCGGCGGCGAAGCAGGCTCTGTACCTCGACGCGGTGCTGCGTGCCGGCATGGTTGGTCACGGCCAGTTCGGTTTTGGTTATAACCGTCCCGCGGCGGCGGGAGCGCAGAGTGACTCGGACTCTTCCTCGGTGATTGATCTGAACCAGCACGACGGCGATGTCGCTAAGAATCACGGAAGAGGCTTAGTTCTAGACCTGAACGAACCTCCTCCACAAGAGATGGCTTGA 714 0.591 MAPRDKTAAVKVNGKGSAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEDAARAYDAAAREFRGPKAKTNFPFPDSDDNNNNNIVVVKNNNRSPSQSSTVESSSRDRDSYSAAATAAADSSPLDLNLAPAGAGFSGSIRFPFQQPFAVFPCRMPAAKQALYLDAVLRAGMVGHGQFGFGYNRPAAAGAQSDSDSSSVIDLNQHDGDVAKNHGRGLVLDLNEPPPQEMA* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0366 237 MobiDBLite consensus disorder prediction 75 120 - -
Amo20g0366 237 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Amo20g0366 237 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Amo20g0366 237 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Amo20g0366 237 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Amo20g0366 237 MobiDBLite consensus disorder prediction 82 120 - -
Amo20g0366 237 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Amo20g0366 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 217 - -
Amo20g0366 237 MobiDBLite consensus disorder prediction 197 237 - -
Amo20g0366 237 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Amo20g0366 237 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Amo20g0366 237 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Amo20g0366 237 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0366 Amo-Chr20 4660705 4661937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0366 1 91 AP2-EREBP Transcription Factor Family AT5G44210 67.677 1.72e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo20g0366 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0366 K09286 - gmx:100170742 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0366 20 4660705 4661937 Amo20g0366 20 4660705 4661937 ECH