Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0357 ATGGGGGTAGACTACTATAAGATTCTGCAGGTTGATAAGAGTGCCACAGATGATGACTTGAAGAAAGCTTATAGAAAGCTTGCCATGAAATGGCACCCTGATAAGAACCCAAACAATAAGAAAGAAGCCGAGTCTAAATTCAAGCAGATATCCGAAGCCTATGAGGTTCTGAGTGATCCACAGAAGAGAGCAATTTATGATCAATATGGAGAAGAAGGGCTAAAAGGGCAAGTGCCACCTCCAGATGCAGCAGGTGCAGGTGGTGCTTCATTCTTCCAAACTGGTAATGGGACAACAACGTTCAGGTTCAATCCCAGGAATGCAGATGACATATTTGCCGATAAAACTTTGCCGGTGGAGGAAATCTTAACCATAGAAATAAAACCGGGGTGGAAGAAAGGGACAAAGATAACGTTCCCGGAGAAAGGAAACGAGCAACCAAATGTGATTGCTGCAGATCTTGTGTTTGTGATTGATGAGAAAGCACACCGTGTGTTCACAAGAGATGGAAATGACTTGGTTGTGACACACAAGATTTCACTTTCTGAAGCTCTAACAGGTTACACTGTCCATTTGAAAACTCTAGATGGCAGGGTTCTTAGCATTCCCATAAACAATGTGATTCATCCAAGCTATGAAGAAGTGGTTCCTAGGGAAGGAATGCCAATTCCCAAAGACCCTTCTAAGAAGGGTAACCTTAGGATCAAGTTTGATATCAAGTTCCCAGCAAGAAGAGAGAAAAAAAAAGGAGAAGAAATCGGAATTGATATGGGGTTGGACTACTATAGGACCTTGGAGGTAGAGAGAACTGCCACAGATGAAGACTTGAAGAAAGCTTATAGAAAGCTTGCCATGAAATGGCACCCTGATAAGAATCCAACCAACAACAAAGATGCTGAGACTAAATTCAAACAGATCTCTGAAGCCTATGAGGTTCTAAGTGATCCGCATAAGAGAGCAATTTGTGATCAATATGGAGAAGATGTCCTTAAAGGGAAAAGACAACCTCCTGGTGGTGGTGGTGGTGGTGGAGCTTCATTCTTCCATGGTGGGGATGGACCAACAATGTTTAGTGACATGTTCAGTTCAGCTAGAGAAGAAGCCACACCCATGAATCAAAGTCCACGCAGGGCTCCTCCCATTGAAAACACACTACTTTGCACCCTTGAGGAACTCTACAAGGGCACTACCAAAAAGATGAAGATTTCAAGGGAAGTTGTGGATGCAAGTGGGAAAGTTATTCATGTGGAGGAAATCTTGACCATTGAAATCAAACCTGGCTGGAAAAAGGGAACAAAAGTCACATTCCAGGAGAAAGGAAACCAGCAGCCAAATGTAATTGCTGCAGATATTGTGTTCATCATTGATGAGAAGCCTCACAATGTGTTTACAAGAGACGGTAATGATTTGGTTGTCACAGAAGAGATATCACTTACCGAAGCTGAAGCACAATCAAGCTACACTGTCCATCTTACAACTCTAGATGGCAGGGATCTGACCATTGCTGTAAACAATGTGATTAGTCCAAACTATGAAGAGGTGGTTGCAGGAGAAGGTATGCCGTTTCCAAAGGATCCTTCAAAGAGGGGTGACCTTAGGATCAAGTTCAACATACTAGTCACAGACAAGGTTGATGCTGGGGCAGAAAATCAAAACTAG 1659 0.4292 MGVDYYKILQVDKSATDDDLKKAYRKLAMKWHPDKNPNNKKEAESKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDAAGAGGASFFQTGNGTTTFRFNPRNADDIFADKTLPVEEILTIEIKPGWKKGTKITFPEKGNEQPNVIAADLVFVIDEKAHRVFTRDGNDLVVTHKISLSEALTGYTVHLKTLDGRVLSIPINNVIHPSYEEVVPREGMPIPKDPSKKGNLRIKFDIKFPARREKKKGEEIGIDMGLDYYRTLEVERTATDEDLKKAYRKLAMKWHPDKNPTNNKDAETKFKQISEAYEVLSDPHKRAICDQYGEDVLKGKRQPPGGGGGGGASFFHGGDGPTMFSDMFSSAREEATPMNQSPRRAPPIENTLLCTLEELYKGTTKKMKISREVVDASGKVIHVEEILTIEIKPGWKKGTKVTFQEKGNQQPNVIAADIVFIIDEKPHNVFTRDGNDLVVTEEISLTEAEAQSSYTVHLTTLDGRDLTIAVNNVISPNYEEVVAGEGMPFPKDPSKRGDLRIKFNILVTDKVDAGAENQN* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0357 552 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 363 541 - -
Amo20g0357 552 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 257 358 - -
Amo20g0357 552 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 114 - -
Amo20g0357 552 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 114 246 - -
Amo20g0357 552 SMART dnaj_3 3 62 IPR001623 -
Amo20g0357 552 SMART dnaj_3 259 318 IPR001623 -
Amo20g0357 552 Gene3D DnaJ domain 1 80 IPR036869 -
Amo20g0357 552 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 363 541 - -
Amo20g0357 552 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 114 246 - -
Amo20g0357 552 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Amo20g0357 552 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Amo20g0357 552 CDD DnaJ_C 119 242 - -
Amo20g0357 552 SUPERFAMILY Chaperone J-domain 259 353 IPR036869 -
Amo20g0357 552 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 114 - -
Amo20g0357 552 Gene3D - 163 242 - -
Amo20g0357 552 Gene3D - 460 540 - -
Amo20g0357 552 PRINTS DnaJ domain signature 62 81 IPR001623 -
Amo20g0357 552 PRINTS DnaJ domain signature 6 24 IPR001623 -
Amo20g0357 552 PRINTS DnaJ domain signature 42 62 IPR001623 -
Amo20g0357 552 PRINTS DnaJ domain signature 24 39 IPR001623 -
Amo20g0357 552 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 257 358 - -
Amo20g0357 552 SUPERFAMILY HSP40/DnaJ peptide-binding domain 375 471 IPR008971 GO:0006457|GO:0051082
Amo20g0357 552 CDD DnaJ 260 315 IPR001623 -
Amo20g0357 552 ProSiteProfiles dnaJ domain profile. 260 326 IPR001623 -
Amo20g0357 552 Pfam DnaJ C terminal domain 382 538 IPR002939 -
Amo20g0357 552 SUPERFAMILY Chaperone J-domain 3 87 IPR036869 -
Amo20g0357 552 CDD DnaJ 4 59 IPR001623 -
Amo20g0357 552 SUPERFAMILY HSP40/DnaJ peptide-binding domain 105 173 IPR008971 GO:0006457|GO:0051082
Amo20g0357 552 Pfam DnaJ C terminal domain 108 242 IPR002939 -
Amo20g0357 552 Gene3D DnaJ domain 259 372 IPR036869 -
Amo20g0357 552 Pfam DnaJ domain 260 323 IPR001623 -
Amo20g0357 552 Pfam DnaJ domain 4 67 IPR001623 -
Amo20g0357 552 Gene3D - 96 162 - -
Amo20g0357 552 Gene3D - 380 458 - -
Amo20g0357 552 CDD DnaJ_C 379 543 - -
Amo20g0357 552 SUPERFAMILY HSP40/DnaJ peptide-binding domain 462 542 IPR008971 GO:0006457|GO:0051082
Amo20g0357 552 SUPERFAMILY HSP40/DnaJ peptide-binding domain 165 246 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0357 Amo-Chr20 4596354 4600486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0357 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 7.63e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0357 K09510 - jre:108984177 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0357 20 4596354 4600486 Amo20g0357 20 4596354 4600486 ECH