Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0356 ATGGAGGGGGAAGCTGCTTCGGATGCAGAGATTGAGAACAATAATACTCAGAAGAGGGAAGATGCTGTTGGTGATAACAGCAATGAGAACAACAATGGAAGCAACAGTAAAATTGGTAACTCGAATGAGGGTCAGAGCAAGCCCAAGCGACAGATGAAGACCCCTTTTCAGCTTGAGACACTGGAGAAAGCTTATGCTTTGGAGACTTACCCTTCAGAGACAATGAGGGCTGAGCTCTCTCAGAAGTTGGGGCTGTCCGATCGGCAGCTACAGATGTGGTTCTGCCACCGCCGGCTGAAGGACAAGAAGGATTTGCCACCTAAGAAGCAGAAGAAGGCAGTGCCGGCGCCAGTGCCAGTGCCAGTGCCAGTGCCGGCACCACCTGTGCCAGATTCTCCTCCAGACCTCAGGCTGGGCCCTGAGCATGTTAATGAGTATGGATCCGGGTCAGGTTCGGGCTCCAGCCCGCTTACCCGCCCTGAGTTTCGAAATGTAGTTCCCCGGGGTGGTATGCTGGGGTACTATGAGCCACCAAAAGCTATGATGGAGCTTAGAGCAATTGCTTGTGTGGAGGCACAGTTGGGGCAGCCACTGAGGGACGATGGACCCATACTCGGAGTAGAGTTTGATCCTTTGCCCCCAGGTGCTTTTGGGGCACCCATAGCTGTTACAGAACAGCAAAAGCGACCTAGTCTTGCTTATGACAGTAAAATGTATGAAAGACACGATGTTAGAACAAATAAGGCTATGGCGAGGACATTACCGGAATATCCATTTCTTCCAAACCAGCCTGGCATTAGGTCAGATGCCTTTGGACAATTAAATCCACCTCATTTACACGATCCAACGGATGGTCCTTCCAGAACTTCCTTTCCTATAAATGAACAGCTGCACAAAATTCATGCTACCCAAAGTCATTCTGCTCGTGTTCGCGTTTCATCTCAGCAAGACAAGCAAGTGATTCCTTATCCATCTCCTCCTCGAGAAGTTGATGTTGCCCAGCCAAGGGAATCATATGCAAACATAGCTAATGCTGGAATAGACTCCCACTTCGCCGATCATCCGATTGCTGGTCAAGAAAATCCTTATGCTTTACCCAGTGGACAAGTTTTGCAGAACGATATGACAATCCGAATAGAAAAGAAACGAAAGATTGATGATGCCAAAATTGCAAAGGAGGTTGAAGCCTATGAAACGAGGATGAGGAAAGAGCTTGAGAAGCAAGATAACCTTAGACGAAAGAATGAAGAGCGACTAAGGAAAGAAATGGAGAGACAAGAACGTGAAAGAAAAAAGGAAGAAGAGAGACTGATACGCGAGAGACAGCGAGAAGAGGAAAGATCTAGGCGTGAACAAAGACGTGAAATAGAACGGAGGGAAAAGTTTTTGATGAAAGAACACTTGAGAGCTGAGAAAAGAAGACAAAAAGAAGAGCTTCGCAAAGAAAAAGAGGCTGAGAGAAGGAAGGCTGCCCTTGAAAAGGCAGCTGCCCGTAGAATAGCTAAGGAATCTATGGAGCTTATTGAGGATGAACAGCTGGAATTGATGGAGCTGGCTGCTACAAGCAAGGGACTTTCCTCGATTATACAACTTGATCTTGATACATTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTTTTTTCCCACCTAAGAGTGTAAAGCTGAAAAGGCCATTTGCTATCCAACCTTGGATTGACTCTGATCAGAATGTTGGCAACCTCCTCATGGTTTGGAGATTCCTGATTACTTTTGCTGATGTTCTTGAGTTATGGCCTTTCACTCTTGACGAGTTTGTGCAAGCATTTCATGACTATGATTCAAGATTGTTGGGTGAGATACATGTAACTCTTCTTAAAGTTATAATAAAGGACATTGAAGATGTTGCAAGGACACCTTCAACAGGATTAGGAATAAGCCAGAATGGAGCTGCTAATCCTGGAGGTGGCCATCCAGAAATTGTGGAAGGAGCATATGCATGGGGCTTTGACATCCGAAATTGGCAGAAGAACTTAAATCAGTTGACATGGCCAGAAATTTTCCGACAGTTAGCATTGTCAGCAGGATTTGGACCAAAGCTGAAGAAAAGAAGTATTACATGGTCATATGCAAATGATAAAGATGAGGGAAGAAGTGGTGAAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCTGTAAGTGCACTGGCAAAAATGCAAGAGAAAGGTCTATTAGCTCCTCGAAGGTCAAGGCACAGGTTAACTCCAGGAACAGTTAAATTTGCTGCCTTTCATGTTCTCTCACTTGAAGGTAGCAAGGGTCTAACAGTACTTGAGCTAGCGGAAAAAATTCAGAAATCTGGTCTTCGGGACCTAACCACCAGCAAGACACCAGAAGCATCAATTTCTGTTGCTTTGACTAGAGACACTAAGCTTTTTGAAAGGATAGCTCCATCAACCTATCGAGTGCGTACTGCATTTAGAAAGGATCCTGCTGATGCTGAGTCCATTCTTTCCGCAGCAAGAAAGAAAATTCAGATATTTGAAAATGGATTTCCAGCTGGTGAAGATGCTGACGATGTTGAAAGAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGATGTTGATGATCTAGTAAACCCTTCAAGTGCTGATCCAATTTCTGGACATTTTGATGAACCAAATGTTTCCACACCAAATGGAAAAGAAAATTTGGATAATGATGTAAAACTTGATCAAAATGAGTTTGAAATAGATTTGCCTTGTTTTCCTGAGGATGGTTACAAGGAAGCTGATTGTCCTGGATCTGTCACCGAACAACCTGTTGTTTGTGAAGATTTGAATACTGGAAATCCTGATCAAGATAATATGGAAATTGATGAAAGTCAATCTGGAGAATCCTGGGTGCAAGGACTTGCTGAAGGAGAGTATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTAGTTGCATTGATTGGTGTGGCAAATGAAGGAAATTCTATTCGTGTTGTTCTGGAGGATCGTCTGGAAGCAGCAAATGCTCTGAAGAAGCAGATGTGGGCTGAAGCACAGATAGATAAAGTTCGTCTGAAAGACGATACTATTAACAAACCAGATATTCCATTACTTATTGCCAACAAAGTTGAAACACATGACACATATCCTGCTGCTGTGGAGGGCAGTCAAAGTCCAATGCTTGACATTAATATTAATAGTATTAATATTGAAACATCACCTGGCACTGCAGAAAACCAAAAGCCAGCACCTGCTGCACAGAGCTTGCATGGTGAAAAGTCCTCCCAAATTCAAGATTTGTGCACAGGCACAGGTCCAGATCACCCTCAGGTGCAGGTACCTCCACAATATTCAAAAAGATCACGTTCACAGTTGAAATCTTATATTGCCCACATAGCAGAGGAGATGTGTATCTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACGTAATCGATATTGGCAGTTTGTTGCTTCTGCTTCTAGCAATGATCCTGGTTCTGGTAGGATCTTTGTTGAATATCATGATGGCAATTGGGAGCTTATTGATTCTGAAGAGGCCCTTGATATTCTTTTGGCAGCATTGGATTCAAGGGGGATCAGGGAATCTCATCTGCGCTTGATGCTGAAAAGGATTGAGAAGTCCTTTAAAGAAAATGTTCGAAGGAATACACAATGTGCCAGTGCCAAAATAGGAAGCAAAGATAAATTTTCGATCAAAAGTGAAGAAAATAATGGACCATATTCAACACCTGATCGCCATGTTGGATCTGACAGTCCTAGCAGTACTCTTCATAACTTGAACTCTGACAAATTGGAAACATCATCATCCTTCAAGATTGAGCTTGGGGAAAGTGAGAATGAGAAGAAAGCTGCCATACAAAGGTATCAAGATTTTCAAAAGTGGATGTGGAAAGAGTGCTATAATTCATCAATATTATGTGCAACAAAATATGGGAAAAAGAGATGCAAACCTCTGGTGGACGTTTGTGACCTCTGTCTGCAACCTTATTTTGTTGAGGACTCCCACTGTAAATCCTGCCACAGGACTTCCGCTACAAATAATGGATTTAGTTTTACTAAGCATGCATTTCATTGTGGAGACAAGTTACCCAAAAATGTTTCTATGGAATCTTCTCTTCCCTTGCGGACAAGATTGCTTAAGGTTCTGTTTGCTTGTATTGAGGCATCAGTTCTCCCCGAAGCATTTGGAACAATTTGGACGAATGATGCTAGGAAGCATTGGGGTGTGAGGTTGAGCAAATCATCCTCTGTTGAGGAGCTTTTACAGATATTGGCCTTGTTTGAGAAAGCTCTACGGAGAGATTTTCTATCATCAAACTTCTCTACAACAGATGAACTATTGGGACTGAGCAATATGGGTGGTAATGCTTCACTTACTTCCACTGATCCTGAATCGGTAGCTGTACTTCCATGGGTTCCACAAACTACTGCAGCAGTGTCTCTCAGGCTTCTTGAGATTGATTCATCTATCAATTATGTACATCTTGAGATACCTGAGCCATGCAAAGAGAAAGAAGCGAAAGAGTACATCCAGAAGCTTCCTTCAAGATATACGTCCTTCAAATGCAATAGAGAGGTTGAACCAGCAGAGTTAGGGCATGGTGAATTCATTAAAGATAAATCTGCTTCAAAGAAAATTGTTCGAAGTGGTAATAAACGTGGACGAGGGTCTAATGATCAAGGACGGGGTAAAAAGATGTCTAAAAGAATGTACAGTTCCAAACGAGATACTGGCCGCCGAAATGTAAAGGTCAATGAGAATCTAAGTGACAAGCTAAAACAGCAGGGACGAGTACTACAAGGATCAGCTGGTGGTCGTGGTCGCCGAACGGTAAGGAAACGGAGAGTGGAAAAGAGAGCTGTTGAAGATTTGTTGCTGGGCCATACCGCAGTGAGTCATAGCCCCAATATTGACAGAGAACCATTGAGAAGATTTGATGAGGAGTGGGATGGTGAAAGGGCAAGTCCCATGACTCCCGTCCACATTGAAATTGATGACAATAGCAACAGTGCTGAAGAGGTGGAATCTGATGACAACGGCCAAGCAGTAGAATATGATCAAGGTAACTGGGAGGTGGGTTATAATGGCATTCCCGCCAACAGTTGGGGTAGGGACTTTGCTGGAATGAGTGATGAAGATGCGGATGCTTTTGAAGATGACAATGACAACAACAATGACAACGGCATTGAAGAGAACGAAGAAGAGGATTCGGAAGCAGATGTTATGAGTGAGGGTTCAGATGGCATGGCACATAGGGTCATAAATGAAGAAGGCTCAGACTCATCTGAATCTGAAGATTCCTATGATTAG 5340 0.4333 MEGEAASDAEIENNNTQKREDAVGDNSNENNNGSNSKIGNSNEGQSKPKRQMKTPFQLETLEKAYALETYPSETMRAELSQKLGLSDRQLQMWFCHRRLKDKKDLPPKKQKKAVPAPVPVPVPVPAPPVPDSPPDLRLGPEHVNEYGSGSGSGSSPLTRPEFRNVVPRGGMLGYYEPPKAMMELRAIACVEAQLGQPLRDDGPILGVEFDPLPPGAFGAPIAVTEQQKRPSLAYDSKMYERHDVRTNKAMARTLPEYPFLPNQPGIRSDAFGQLNPPHLHDPTDGPSRTSFPINEQLHKIHATQSHSARVRVSSQQDKQVIPYPSPPREVDVAQPRESYANIANAGIDSHFADHPIAGQENPYALPSGQVLQNDMTIRIEKKRKIDDAKIAKEVEAYETRMRKELEKQDNLRRKNEERLRKEMERQERERKKEEERLIRERQREEERSRREQRREIERREKFLMKEHLRAEKRRQKEELRKEKEAERRKAALEKAAARRIAKESMELIEDEQLELMELAATSKGLSSIIQLDLDTLQNLESFRDSLCFFPPKSVKLKRPFAIQPWIDSDQNVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVTLLKVIIKDIEDVARTPSTGLGISQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQLALSAGFGPKLKKRSITWSYANDKDEGRSGEDIISTLRNGSAAVSALAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYRVRTAFRKDPADAESILSAARKKIQIFENGFPAGEDADDVEREESESDEVDEDPDVDDLVNPSSADPISGHFDEPNVSTPNGKENLDNDVKLDQNEFEIDLPCFPEDGYKEADCPGSVTEQPVVCEDLNTGNPDQDNMEIDESQSGESWVQGLAEGEYSDLSVEERLNALVALIGVANEGNSIRVVLEDRLEAANALKKQMWAEAQIDKVRLKDDTINKPDIPLLIANKVETHDTYPAAVEGSQSPMLDININSINIETSPGTAENQKPAPAAQSLHGEKSSQIQDLCTGTGPDHPQVQVPPQYSKRSRSQLKSYIAHIAEEMCIYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEYHDGNWELIDSEEALDILLAALDSRGIRESHLRLMLKRIEKSFKENVRRNTQCASAKIGSKDKFSIKSEENNGPYSTPDRHVGSDSPSSTLHNLNSDKLETSSSFKIELGESENEKKAAIQRYQDFQKWMWKECYNSSILCATKYGKKRCKPLVDVCDLCLQPYFVEDSHCKSCHRTSATNNGFSFTKHAFHCGDKLPKNVSMESSLPLRTRLLKVLFACIEASVLPEAFGTIWTNDARKHWGVRLSKSSSVEELLQILALFEKALRRDFLSSNFSTTDELLGLSNMGGNASLTSTDPESVAVLPWVPQTTAAVSLRLLEIDSSINYVHLEIPEPCKEKEAKEYIQKLPSRYTSFKCNREVEPAELGHGEFIKDKSASKKIVRSGNKRGRGSNDQGRGKKMSKRMYSSKRDTGRRNVKVNENLSDKLKQQGRVLQGSAGGRGRRTVRKRRVEKRAVEDLLLGHTAVSHSPNIDREPLRRFDEEWDGERASPMTPVHIEIDDNSNSAEEVESDDNGQAVEYDQGNWEVGYNGIPANSWGRDFAGMSDEDADAFEDDNDNNNDNGIEENEEEDSEADVMSEGSDGMAHRVINEEGSDSSESEDSYD* 1780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0356 1779 ProSiteProfiles DDT domain profile. 569 628 IPR018501 -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 1244 1271 - -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 1 57 - -
Amo20g0356 1779 Gene3D - 30 105 - -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 1073 1121 - -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 1712 1779 - -
Amo20g0356 1779 Pfam HB1, ASXL, restriction endonuclease HTH domain 751 819 IPR007759 GO:0006355
Amo20g0356 1779 CDD homeodomain 49 98 IPR001356 GO:0003677
Amo20g0356 1779 SMART testlast3 569 628 IPR018501 -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 852 874 - -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 1722 1752 - -
Amo20g0356 1779 PANTHER HOMEOBOX DOMAIN PROTEIN 16 1779 - -
Amo20g0356 1779 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
Amo20g0356 1779 ProSiteProfiles HARE-type HTH domain profile. 751 820 IPR007759 GO:0006355
Amo20g0356 1779 Pfam DDT domain 571 625 IPR018501 -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 112 135 - -
Amo20g0356 1779 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 16 1779 IPR044977 GO:0006357
Amo20g0356 1779 Coils Coil 465 496 - -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 1241 1271 - -
Amo20g0356 1779 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1142 1214 IPR028941 -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 26 53 - -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 101 162 - -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 1565 1592 - -
Amo20g0356 1779 Coils Coil 394 459 - -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 420 453 - -
Amo20g0356 1779 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 959 1003 IPR028942 -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 1551 1592 - -
Amo20g0356 1779 MobiDBLite consensus disorder prediction 843 904 - -
Amo20g0356 1779 SUPERFAMILY Homeodomain-like 34 103 IPR009057 -
Amo20g0356 1779 Pfam Homeodomain 47 103 IPR001356 GO:0003677
Amo20g0356 1779 SMART HOX_1 46 108 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0356 Amo-Chr20 4586511 4596112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0356 4 1705 Homeobox Transcription Factor Family AT1G28420 48.977 0.0 1338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo20g0356 WSD 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0356 - - gmx:100777465 2396.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0356 20 4586511 4596112 Amo20g0356 20 4586511 4596112 ECH
Amo20g0356 20 4586511 4596112 Amo13g4273 13 137820914 137830642 ECH
Amo13g4273 13 137820914 137830642 Amo20g0356 20 4586511 4596112 PCT
Amo20g0356 20 4586511 4596112 Amo13g4273 13 137820914 137830642 PCT