Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0350 ATGGCGAGCTTGGAATTCTATTTACAACAAAACCAAGATGGTGTTTCACTTCTGGATTGGAGCAAGAGGTTTAGAATTGCAGCGGGTGTAGCTAGAGGGCTTCAATACCTGCATGAAGTGGTAGCACCAAACATAGTACATGGTTGTGTTAAGTCCTTTAATGTTCTTATTGATGTGAATTTCTGTGCCAGGGTTTGTGATTATGGACTTAACTTCTTGGCACCAATGGAGAAGAGAGGGGTAGTGGGGTATGTGGATGGTGAGTATTGGAATGAGAGAGGGGGTGGTGCTACTAAAGAGAGTGATGTTTATGGTTTAGGTGTGGTGCTTTTGGAGCTTCTAAGTGGAAGAGGGTGTGAGGGAGGGTCATTGGCAAATTGGGCATTGCCTTTGATTAAGGAAATGAGTTTTGGTCAAGTTTTAGATCCCAGGCTTGTGACTCCTTCTGATATGAGTCCTTTGGTTAGATTGGCCAAAGTTGCTTCAGCTTGTGTTGGTAATCCAAGAAAGTGTAGGCCTAGTGTTGCTCAAGTTGCTACCATTTTGAACGATTTAGAAATACAAATGCTAGTGATTGGTATGAGAATTTCATTGAGGAAGAAGACTAGAAGAGGGCATGGCATTATCACAAAAGTTCTGACGGGTTGA 648 0.4259 MASLEFYLQQNQDGVSLLDWSKRFRIAAGVARGLQYLHEVVAPNIVHGCVKSFNVLIDVNFCARVCDYGLNFLAPMEKRGVVGYVDGEYWNERGGGATKESDVYGLGVVLLELLSGRGCEGGSLANWALPLIKEMSFGQVLDPRLVTPSDMSPLVRLAKVASACVGNPRKCRPSVAQVATILNDLEIQMLVIGMRISLRKKTRRGHGIITKVLTG* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0350 215 SUPERFAMILY Protein kinase-like (PK-like) 3 182 IPR011009 -
Amo20g0350 215 Gene3D Transferase(Phosphotransferase) domain 1 2 193 - -
Amo20g0350 215 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 189 - -
Amo20g0350 215 Pfam Protein tyrosine and serine/threonine kinase 3 180 IPR001245 GO:0004672|GO:0006468
Amo20g0350 215 ProSiteProfiles Protein kinase domain profile. 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0350 215 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0350 Amo-Chr20 4521528 4522654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0350 3 190 Receptor kinase-like Gene Family AT3G59420 40.594 2.83e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Amo20g0350 PK_Tyr_Ser-Thr 7.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0350 - - adu:107468261 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0350 20 4521528 4522654 Amo20g0350 20 4521528 4522654 ECH
Amo20g0350 20 4521528 4522654 Amo10g0268 10 2700164 2708410 hybridization