Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0349 ATGGCATGGTGCAATGACACTCATGAGAAAGAGATAATTGCTTCCAATAATAGTACTATTACTCTTAGACCTAAATCCGACCCAAACGTAACTTGCCCCTCATGTGGCCATAACATTCAAATAATCCAAGAGCAGGGTGGAATTCATGAGTTGCCGGGGTTACCAGCTGGAGTGAAGTTTGACCCAAATGACATTGAAATATTGGAGCATTTGGAGGCAAAAGTTATGTCTCATGTGCCCAACCTTCATCCTCTCATTGATGAGTTCATACCAACACTTCAAGACGAGAATGGCATCTGTTATACACACCCAGAGAAGCTACCAGGAGTAAAGAAAGATGGGCAGATTCGGCACTTCTTCCACAGGCCTTCAAAAGCATACACAACAGGAACAAGGAAGAGAAGAAAGGTTCACACCGATGAAGATGGAAGCGAAACAAGGTGGCACAAAACCGGAAAAACAAGAGCGGTGGTGGCCGGCGGCCTAGTCAAGGGTTTCAAGAAGATTCTAGTACTATACACCAACTATGGGAGGCAAAAAAAGCCTGAGAAAACTAACTGGGTGATGCATCAATACCATCTTGGAAGCAATGAAGAAGAGAGAGATGGAGAACTAGTAGTTTCAAAAGTGTTCTATCAAACACAACCTAGACAATGCGGCAATTCCATTGTTATAAAGGAAGATGATGATGATCTTCCCTATGGAAAGATATTGATGATGAATAACAGAAAGAAGCACAAAAATAATGATGATGCTGCTCCTGTTGTGGACTACTACATAAATTATGACCATGTTGAGCATCATCATAATCACAATCATAATAGTCAAAGATGTTCATCACCTACTCAACTTATTCCAAACTTGGTCCTCCAAGGTGATTCCTCTTCTCTTTTTCGCTTTGCTTCATCATCACTGGATGGGAATGCCAACAAAACAAGACTTTTTGAGAGAAAGTTGTAG 960 0.4125 MAWCNDTHEKEIIASNNSTITLRPKSDPNVTCPSCGHNIQIIQEQGGIHELPGLPAGVKFDPNDIEILEHLEAKVMSHVPNLHPLIDEFIPTLQDENGICYTHPEKLPGVKKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEDGSETRWHKTGKTRAVVAGGLVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEERDGELVVSKVFYQTQPRQCGNSIVIKEDDDDLPYGKILMMNNRKKHKNNDDAAPVVDYYINYDHVEHHHNHNHNSQRCSSPTQLIPNLVLQGDSSSLFRFASSSLDGNANKTRLFERKL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0349 319 MobiDBLite consensus disorder prediction 127 146 - -
Amo20g0349 319 Pfam No apical meristem (NAM) protein 55 194 IPR003441 GO:0003677|GO:0006355
Amo20g0349 319 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 1 295 - -
Amo20g0349 319 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 295 IPR044799 GO:0003700
Amo20g0349 319 ProSiteProfiles NAC domain profile. 54 213 IPR003441 GO:0003677|GO:0006355
Amo20g0349 319 SUPERFAMILY NAC domain 49 213 IPR036093 GO:0003677|GO:0006355
Amo20g0349 319 Gene3D NAC domain 64 217 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0349 Amo-Chr20 4513621 4517287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0349 1 234 NAC Transcription Factor Family AT4G28500 68.595 3.47e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo20g0349 NAM 2.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0349 - - gmx:100795920 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0349 20 4513621 4517287 Amo20g0349 20 4513621 4517287 ECH
Amo20g0349 20 4513621 4517287 Amo13g4266 13 137684592 137688464 ECH