Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0347 ATGGGGTTGATTGATCTCAACACCACAGAGGAAGATGAAGCACAAACACCATCATCCGCTTCCACGGGCTCTGCTTCATCACCTTCTCACTCTGGTATAAGCACTTCAGCTTCAGCTTTGGCTCCACCTTCTTCTTCTTCTGTGTGCTTGGAGCTATGGCACGCTTGTGCTGGCCCTATGATCTCTCTCCCAAAGAAAGGAAGCGTGGTTGTGTACTTACCACAAGGCCACTTTGAACAGGCTCAGGATTTTCCCGTCACTGCCTATAACATCCCACCTCATGTCTGCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGCAGTGATGAAGTCTATTGCCAGGTCTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGAAAAACTTGCGGCATGGGGTAGTTGATGCTGATGGTGAAGAAGATGATACTGAAGCTGTGGTGAAGTCAACAACACCCCATATGTTTTGCAAGACTCTTACTGCTTCTGACACTAGCACTCATGGTGGATTTTCTGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCTCTGGATTACAGTCAACAGAGGCCTTCACAAGAGCTTGTGGCGAAGGATTTGCATGGCCTTGAATGGAGGTTTAGACATATATACAGAGGGCAGCCACGGAGACATTTGCTCACAACTGGATGGAGTGCATTTGTGAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTGTTATTCCTTAGGGGTGACGATGGAGAATTAAGACTAGGGATTCGTAGGGCTGCTCAGTTGAAGAATGGTGGTATCTTTGCCACTCCTTCTATTCAGCAACTGAATCCTGGCTCAGTCATGAATATTATTAATGCTTTGTCTTCGAGAAGTGCCTTTAGTGTTTGCTATAATCCAAGGGTGAGCTCCAAGGAATTCATCATACCGCCTCACAAATTTTTAAAGAGCCTTGATTTTTGTTATTCAGTTGGAATGAGGTTCCAGATGCGCTTCGAAACTGAAGATGCTGCAGAGCGCAGATTCACTGGATTAATTGCTGGCATTGGTGATGCGGATCCAGTTAGATGGCCAGGTTCAAAATGGAGATGCCTTCTGGTAAGGTGGGATGATGTTGAAGCAGGTAGGCATAACAGGGTTTCCCCATGGGAGATTGAGCCATCTGGGCCTGCTCCTACTTCCAATAACTTGATGGCAGCCGGTTTGAAGAGGAGCCGAATTGGATCTTCAGGGAAACTAGAATTTCCACTTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTGAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACCCCTTATGATGGTATTAATTCTCAGAGTCCAAGGTTATCCGAGTTAGGGAGGTGTTATCCTGGTTCTATTGGTTCTGGGACATCGGTTGTAGGAAGTAATATCAGAATCCCTCAAGCCGGCTCTGATTTTTCCTACAACAATGGCACAGGCTTTGGGGAATCATTCCGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGCCAACCATATGGAAGGGCCTTGTCTTTTGATGAGGCTCGCACAAATGGTCGCTTTGGACTTTTTGATGGTTATCATCTGGTTAGCCCCAGAAATGGATGGTCAACCCAGGTGCATGACAATCCATCACATCTGCATGCATCTGTAGCATCAATGCAAGTGTCGTCTCCTTCATCTGTGTTAATGTTCCAGCAAGTGGTTAATCCTCTTTCAAACTCTGATTATGATAAAAAGAGTAACCAGGAGATAGAGGGTACAGTCCATTACCGGCGTCCCTATGCAACTGAAGTGAAAGGTGGAACATTTGCATCGTTCCCAACTGATGAGCCTATTTTCTCTGGAAGAGCTAAGGAAGATATGAACTCCCTTGGCATGTTTAACTTCCATAATCAGTTGGGCACTTCAAAGTCTGTTGAATCAGCATTGACAATGAGAGAAAGTCAAGAGTTGGCATCTTCGTGTAAAAGTAGCTGCAGACTCTTCGGATTCTCTTTAACCGAGGACCCTCACATTGCAAACAAGGAGGCTGACCGACCTTTGATCACTCGGCAATTGAGTTCAGTCCCTACATTTACTCAACACGCCGAAGATAGTTTTCCTCCCGGCCATTCTCTCAGGACTAAAGCTGTTGAGAGTAACTTCACCAAAGGTGTGTTGCAGTGTTGA 2202 0.4587 MGLIDLNTTEEDEAQTPSSASTGSASSPSHSGISTSASALAPPSSSSVCLELWHACAGPMISLPKKGSVVVYLPQGHFEQAQDFPVTAYNIPPHVCCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEKNLRHGVVDADGEEDDTEAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKNGGIFATPSIQQLNPGSVMNIINALSSRSAFSVCYNPRVSSKEFIIPPHKFLKSLDFCYSVGMRFQMRFETEDAAERRFTGLIAGIGDADPVRWPGSKWRCLLVRWDDVEAGRHNRVSPWEIEPSGPAPTSNNLMAAGLKRSRIGSSGKLEFPLPNGIGTSDFGESLRFRKVLQGQEILGVNTPYDGINSQSPRLSELGRCYPGSIGSGTSVVGSNIRIPQAGSDFSYNNGTGFGESFRFQKVLQGQEIFPSQPYGRALSFDEARTNGRFGLFDGYHLVSPRNGWSTQVHDNPSHLHASVASMQVSSPSSVLMFQQVVNPLSNSDYDKKSNQEIEGTVHYRRPYATEVKGGTFASFPTDEPIFSGRAKEDMNSLGMFNFHNQLGTSKSVESALTMRESQELASSCKSSCRLFGFSLTEDPHIANKEADRPLITRQLSSVPTFTQHAEDSFPPGHSLRTKAVESNFTKGVLQC* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0347 733 Pfam Auxin response factor 284 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo20g0347 733 ProSiteProfiles B3 DNA-binding domain profile. 156 258 IPR003340 GO:0003677
Amo20g0347 733 MobiDBLite consensus disorder prediction 9 38 - -
Amo20g0347 733 PANTHER AUXIN RESPONSE FACTOR 40 732 - -
Amo20g0347 733 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 732 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo20g0347 733 Pfam B3 DNA binding domain 156 257 IPR003340 GO:0003677
Amo20g0347 733 Gene3D - 154 258 IPR015300 -
Amo20g0347 733 Gene3D - 320 389 - -
Amo20g0347 733 MobiDBLite consensus disorder prediction 1 38 - -
Amo20g0347 733 CDD B3_DNA 154 256 IPR003340 GO:0003677
Amo20g0347 733 SMART B3_2 156 258 IPR003340 GO:0003677
Amo20g0347 733 SUPERFAMILY DNA-binding pseudobarrel domain 149 262 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0347 Amo-Chr20 4483074 4487535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0347 44 510 B3 DNA Binding Superfamily AT5G60450 49.177 3.66e-144 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo20g0347 B3 3.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0347 K14486 - gmx:100789906 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0347 20 4483074 4487535 Amo20g0347 20 4483074 4487535 ECH