Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0344 ATGGAGATGAAACAAATGCAGAGTGCTGAAGAGTTGTTTCAAGCTCAATCCCATTTATACAGCTATACATACCATTTCATTGGGTCTATGTGCCTCAAAAGTGCAGTTCATTTGGGAATACCAGACATAATCCACAAGCATGGTCAACCCATTACACTTAATGAGTTGGTCTTGGCACTTCAAATTGACCCTAACAAATCCGGATATGTGTATAGGCTCATGCGGTTCTTGGTGCATTCTGGATTCTTTGTTACAACCAAGATTGATGGTGGAAAAGAAGAAGAAGAAGAAGAAATAATGGGGTATGATCTTACACCTTCCTCAAGGCTCCTCCTCAAAGACACTGTCCCAACTCTCTCTCCTTTTGTTCAAGCAATGTTTCATCCTGCTATACTTCACTCTCCTGAGTTCTTGGCAGAATGGTTCCACACAAATGAACCTACACCCTTTCACACTGCACATGGCAAAAGCTTTTGGGACTATTTAAGCCAAAACCAAGAGTTTAATGGCCTCTTCAATGAAGCAATGATCAGTGATTCTGGAATGATGAATTTGGTGATCAAAGATTGCAAGCCTGTTTTTGAGGGGATGAGTTTATTGGTTGATGTTGGCGGCGGAAAAGGCGCCGTGGCTAGGTTGCTTTCTGAATCTCTGCCTCATTTGCAATGCATAGTACTTGATCTTCCACACGTTGTTGAAAATTCACAAGATTGCAATAACTTGAAATTTGTTGGAGGTGACATGTTTCAATCTATTCCTTCAGCTGATGCAATTCTTCTTAAGTTAGTTTTGCATGCTTATAGTGATGAAGATTGCATTAAGGTACTGAAGAAGTGTAGAGAAGCTATTTCAAGCAAAGGTAAGGAAGGGAAAGTAATAATCATAGACATAGTGATCAATGAGAAGAATGATAAGCGTGAATTGACAGAATCAAAGCTCCTCTTTGATCTGCTAATGATGAGTGTGGTCACTGGAAAAGAGAGGGAAGAAAAAGAATGGAAGAAGCTCTTCTTGGAAGCTGGATTCAGTCACTACAAGATAACACCCATATTTGGTATGAGGTCACTCATTGAAGTTTATCCTTGA 1086 0.3996 MEMKQMQSAEELFQAQSHLYSYTYHFIGSMCLKSAVHLGIPDIIHKHGQPITLNELVLALQIDPNKSGYVYRLMRFLVHSGFFVTTKIDGGKEEEEEEIMGYDLTPSSRLLLKDTVPTLSPFVQAMFHPAILHSPEFLAEWFHTNEPTPFHTAHGKSFWDYLSQNQEFNGLFNEAMISDSGMMNLVIKDCKPVFEGMSLLVDVGGGKGAVARLLSESLPHLQCIVLDLPHVVENSQDCNNLKFVGGDMFQSIPSADAILLKLVLHAYSDEDCIKVLKKCREAISSKGKEGKVIIIDIVINEKNDKRELTESKLLFDLLMMSVVTGKEREEKEWKKLFLEAGFSHYKITPIFGMRSLIEVYP* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0344 361 PIRSF O-mtase 1 361 IPR016461 GO:0008168
Amo20g0344 361 Gene3D - 2 111 IPR036388 -
Amo20g0344 361 PANTHER O-METHYLTRANSFERASE 7 361 IPR016461 GO:0008168
Amo20g0344 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 118 360 IPR029063 -
Amo20g0344 361 PANTHER ASMT2 7 361 - -
Amo20g0344 361 Pfam O-methyltransferase domain 138 343 IPR001077 GO:0008171
Amo20g0344 361 Gene3D Vaccinia Virus protein VP39 113 361 IPR029063 -
Amo20g0344 361 SUPERFAMILY "Winged helix" DNA-binding domain 9 114 IPR036390 -
Amo20g0344 361 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Amo20g0344 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 361 IPR016461 GO:0008168
Amo20g0344 361 CDD AdoMet_MTases 200 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0344 Amo-Chr20 4446676 4448406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0344 30 359 Monolignol Biosynthesis Gene Families AT5G54160 32.059 5.23e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0344 K22588 - qsu:112018723 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0344 20 4446676 4448406 Amo20g0344 20 4446676 4448406 ECH