Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0337 ATGGAACATCATAACAAGTTGTTTCTTCTACTCATGCTTCTTATTCAAGTTCTGCTTGTAGCAGCACAAACAAACAGCCAAGACTATAATGGCTTAGCAGCTCTTACAGGATTCTGGACTAACAGACCACCAAATTGGGTTGGTACAGATCCTTGTGGCAGTAATTGGGAAGGAATTCGTTGCTCCAACTCAAGGATTACAGAATTGAAACTGTTAAGCATGAATTTGGAGGGACAACTGTCTTCAGCAATCCAACAATTACCTGAACTAGACACATTGGATCTTTCTTACAACACTGGCTTGACAGGAACGATTCCACAAGAAATTGGGAGTTTGAAGAAGCTAAAATCCCTCGCCTTGGTTGGTTGTGGTCTCTCTGGTCCTATACCAGACTCTATTGGAGCTTTGAAGCAACTAACCTTTCTAGCACTTAATATGAATCGGTTCAACGGAACAATTCCGGGCTCCATTGGCAATCTGACTAATATCAATTGGCTTGATGTTGCTGATAATCAACTTGAAGGACAAATTCCTGTATCTGATAACAAAGGAAGACCAGGACTTGACCTGCTCCTTCAGGCACAACACTTTCATATGGGGAACAATAAGTTCTCTGGTCAATTACCGGAAAAACTGTTCAATTCAAAAATGATACTAAAACATGTGCTTTTGGACAACAATCAACTGCAGGGTAGTATTCCTAGCTCCCTTGGTCAAGTGAGCACATTGGAGGTGTTGCGCTTAGATACAAATGGATTTAGCGGAGCAGTGCCTTCAACTTTAAAGAATCTTGGACAGCTGAGTGAGCTGTATTTATCCCATAATAAGCTAAATGGCTCTCTGCCGGACCTTACCGGATTGAACAGTCTCTCCTATGTGGATATGAGCAACAATTCTTTCAACGATTCTGATATTCCATTATGGGTTTCAAGTTTGCAATCTCTGACAACTGTGCTACTAGGGGACAACCAGCTGAGTGGCACATTGAATCTTACCAGTGGCTACAGTAACAGTCTGCAGCTCATTGATTTGCAGGATAATCAAATAACCGATTACAAGCCAGGAAGCAAAAAGATAAATTTCCAAGTGGTGTTAGCTGGTAATCCAATTTGTCATGAATCTGAAGCTCAAAAACTGAGTTATTGCCAACTGCCCCTACAAACTCCTGCATACACAACACCACTAAATAATTGCTCCGCTCAATCATGCTCTTCTGGTCAGGTTTCCAGCCCAAATTGTAAATGTGCATATCCCTATACTGGAACACTCTACTCCAGAGCTCTTAGTTTCACAACCCTTAACGATACTGATTACAAGGAGCTTGAGCAGTCTTTGTTGAAGAGCTTTGCGTCCCAAAAGCTTCCTGTGGATTCAGTTTCTCTGAGTAATCCCTCAAGGAATGCATCTAACAACAATTTTCAGTTGACTCTGGATGTCTTCCCATCTCAAACTGATCGTTTCAATAGAACTGGAGTTTCAAGTGTTGCTTTTGTGCTAAGTAACCAAATTTTCAAGCCCCCGGAATTTTTCTCCCCTTACTTCTTCAATGGTCTCAACTATCAATACTATGGAGGAGAACCTAAATCAAAGTCAAAGCATACCGGAGCTATAATTGGTGCAGTAGTTGCTGTTGTGGTGTTTCTTGGATTAGCATTCGTCATAGGCATGTATGCCCTCCGCCAGAAAAGAAGAGCAGAAAGATCTGAACTCAATCCTTTTGCAAATTGGGAACAGAACCCGAATAGTGGAGCTGCTCCTCAGTTGAAAGGAGCGCGATGGTTTTCTTTCGAAGATCTGAGGAAATACACCAACAACTTCTCAGAAAGTAATACTATTGGAAGTGGGGGCTATGGAAAGGTGTACCAAGGTGTTCTTCCTGCTGGGGAAGTGGTTGCCATCAAGCGGGCTGCACAAGAATCTATGCAAGGTGCTGTTGAGTTTAAAACTGAGATTGAACTTCTTTCAAGGGTCCACCATAAGAATCTTGTTAGTCTTGTGGGTTTCTGCTTTGAGAAGGGTGAACAAATGCTGGTGTACGAGTATGTTCCAAATGGTACTATAATGGATAGTCTTACAGGAAAGTCTGGGATATCGATGGATTGGATACGGAGGCTGAAAGTCGCGTTGGGCGCAGCGAGGGGTCTGGCATATCTTCATGAACTTGCTAACCCACCAATCATACACAGAGACATAAAATCAAGCAATATCCTACTTGATAATCACCTTAATGCAAAAGTGGCTGATTTTGGTCTCTCAAAACTTCTTGTTGATAGTGAAAGGGGCCATGTCACTACTCAAGTCAAAGGGACAATGGGATACTTGGATCCTGAATATTACATGAGCCAGCAATTGACCGAAAAGAGCGATGTATATAGCTTTGGAGTGGTGATGCTTGAGCTAGTAACAGCGAAAAGGCCAATAGAGCAAGGGAAGTATATTGTGAGAGAGGTAATGAGGGTAATGGATACATCAAAAGACTTGTACAATCTTCACTCTATTGTTGATCCAACCATAGTCAGAAGCACAAGTCCTAAGGGGTTAGAGAAGTTTGTTGAAGTGGCAATGAGGTGTGTGAAAGAATATGCATCTGAGAGGCCTTCTATGGCTGAGGTTGTGAAAGAGATTGAGAACATAATCCAACTTGCTGGTTTGAACCCGAGTGTTGAATCAGCTTCCACCACAGAAAGCTATGAGGTGCCACTTGGGCAAAATGTCAAACACCTTTATGACAATGAAGATTTTAGCCATTCTGGAAACTTCCCAACAGCAAAGATAGAACCTCAATGA 2787 0.4209 MEHHNKLFLLLMLLIQVLLVAAQTNSQDYNGLAALTGFWTNRPPNWVGTDPCGSNWEGIRCSNSRITELKLLSMNLEGQLSSAIQQLPELDTLDLSYNTGLTGTIPQEIGSLKKLKSLALVGCGLSGPIPDSIGALKQLTFLALNMNRFNGTIPGSIGNLTNINWLDVADNQLEGQIPVSDNKGRPGLDLLLQAQHFHMGNNKFSGQLPEKLFNSKMILKHVLLDNNQLQGSIPSSLGQVSTLEVLRLDTNGFSGAVPSTLKNLGQLSELYLSHNKLNGSLPDLTGLNSLSYVDMSNNSFNDSDIPLWVSSLQSLTTVLLGDNQLSGTLNLTSGYSNSLQLIDLQDNQITDYKPGSKKINFQVVLAGNPICHESEAQKLSYCQLPLQTPAYTTPLNNCSAQSCSSGQVSSPNCKCAYPYTGTLYSRALSFTTLNDTDYKELEQSLLKSFASQKLPVDSVSLSNPSRNASNNNFQLTLDVFPSQTDRFNRTGVSSVAFVLSNQIFKPPEFFSPYFFNGLNYQYYGGEPKSKSKHTGAIIGAVVAVVVFLGLAFVIGMYALRQKRRAERSELNPFANWEQNPNSGAAPQLKGARWFSFEDLRKYTNNFSESNTIGSGGYGKVYQGVLPAGEVVAIKRAAQESMQGAVEFKTEIELLSRVHHKNLVSLVGFCFEKGEQMLVYEYVPNGTIMDSLTGKSGISMDWIRRLKVALGAARGLAYLHELANPPIIHRDIKSSNILLDNHLNAKVADFGLSKLLVDSERGHVTTQVKGTMGYLDPEYYMSQQLTEKSDVYSFGVVMLELVTAKRPIEQGKYIVREVMRVMDTSKDLYNLHSIVDPTIVRSTSPKGLEKFVEVAMRCVKEYASERPSMAEVVKEIENIIQLAGLNPSVESASTTESYEVPLGQNVKHLYDNEDFSHSGNFPTAKIEPQ* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0337 928 CDD STKc_IRAK 612 878 - -
Amo20g0337 928 Pfam Protein kinase domain 607 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0337 928 Gene3D Ribonuclease Inhibitor 184 410 IPR032675 -
Amo20g0337 928 SUPERFAMILY L domain-like 40 372 - -
Amo20g0337 928 SUPERFAMILY Protein kinase-like (PK-like) 586 875 IPR011009 -
Amo20g0337 928 ProSiteProfiles Leucine-rich repeat profile. 266 288 IPR001611 GO:0005515
Amo20g0337 928 Gene3D Transferase(Phosphotransferase) domain 1 682 892 - -
Amo20g0337 928 Gene3D Ribonuclease Inhibitor 32 183 IPR032675 -
Amo20g0337 928 SMART serkin_6 606 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0337 928 Pfam Leucine rich repeat 242 299 IPR001611 GO:0005515
Amo20g0337 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 726 738 IPR008271 GO:0004672|GO:0006468
Amo20g0337 928 PANTHER RECEPTOR-LIKE PROTEIN 55 6 899 - -
Amo20g0337 928 ProSitePatterns Protein kinases ATP-binding region signature. 612 634 IPR017441 GO:0005524
Amo20g0337 928 ProSiteProfiles Protein kinase domain profile. 606 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0337 928 PANTHER RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED 6 899 - -
Amo20g0337 928 Gene3D Phosphorylase Kinase; domain 1 577 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0337 Amo-Chr20 4415750 4421775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0337 8 928 Receptor kinase-like Gene Family AT5G49760 52.947 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Amo20g0337 Pkinase 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0337 - - gmx:100786172 1358.58