Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0335 ATGTTTAAGTCCAAGCCCACATGGCAGCATGATATCACTATCACCGCCACTTCTTCTTCTTCTTCTAGTACTAGTAGTAGTAGTAGAACCTCTCCTTACTCTTGCGACGACAGAAGCCCTGAGCCCAAGCCCAGGTGGAACCCAAAGCCCGAGCAGATTCGGATCCTGGAGTCCATATTCAACTCTGGGATGGTCAACCCTCCCAGGGATGAGATCAGGAAGATAAGGGCTCAGTTGCAAGAGTACGGTCAAGTTGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGCAAGTCTAGAACCAAACACAAGCTCCGCCACCTCCACACCAAGAATAACCCTCCTCCTCCACCTCCTCCGTCATCCACCTCATCCTCCTCCTCTGACAAGTCATCATCCCCACCCACTACTACTACTACTACTACTTCTGCTGCTACTACCAATACCTATTTCTATACCCACAATCACACCGCCACTATTCCACCACCACCACCGCCGCCGCACGTGGCCGCTGAGACTTTCATCTTCCCGCTGCAACATCATCAAGGTAACAGTACTACTACTACTATAACATCATCCCCGCAAGGCCTTTTCTTCTCTGAGCTCTCCAATGTGGTGCAAGCTCATCATCATCAGCCGTCTCCACCACCACCTCATCAGCTCATGATGCATAACGTCGTTGGTCCCTGCACTAGTCTCTTGCTTAGTGAGATCATGATGAATAATAATGCTTCAAAGAAAGATCATCATCAAGAACATGCCAGCAGCAATAAGTCCCTCAAATTAATGCACCATGGCGGCGGCCACCACCACACACCAAAGCTTAGTTTCTGCGTCACTCCACCTACTACTACAACCGCCACTCTCGTCCCTCCCACCACCACACCATCACTCCTCACTCAAGATGCAGTAGGCACTGGAGATGGAAGTGAGAAAATAACGGTGTTCATAAATGATGTGGCGTTTGAGGTGGCGGCGGGGCCATTCAATGTAAGGGAGGCATTTGGGGAGGATGCAGTCCTGATTCACGCCATCACTGGTCAACCTCTTCTCACTAACCAATGGGGTCTTACCCTCCACTCTCTCCACCATGGCGCTTCTTATTATCTGCTTCTACATACCCTCCCTCACGCACCTTATTAG 1143 0.5022 MFKSKPTWQHDITITATSSSSSSTSSSSRTSPYSCDDRSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRTKHKLRHLHTKNNPPPPPPPSSTSSSSSDKSSSPPTTTTTTTSAATTNTYFYTHNHTATIPPPPPPPHVAAETFIFPLQHHQGNSTTTTITSSPQGLFFSELSNVVQAHHHQPSPPPPHQLMMHNVVGPCTSLLLSEIMMNNNASKKDHHQEHASSNKSLKLMHHGGGHHHTPKLSFCVTPPTTTTATLVPPTTTPSLLTQDAVGTGDGSEKITVFINDVAFEVAAGPFNVREAFGEDAVLIHAITGQPLLTNQWGLTLHSLHHGASYYLLLHTLPHAPY* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0335 380 MobiDBLite consensus disorder prediction 245 266 - -
Amo20g0335 380 Gene3D - 14 103 - -
Amo20g0335 380 ProSiteProfiles 'Homeobox' domain profile. 39 104 IPR001356 GO:0003677
Amo20g0335 380 MobiDBLite consensus disorder prediction 1 35 - -
Amo20g0335 380 SMART HOX_1 41 108 IPR001356 GO:0003677
Amo20g0335 380 MobiDBLite consensus disorder prediction 124 145 - -
Amo20g0335 380 CDD homeodomain 42 104 IPR001356 GO:0003677
Amo20g0335 380 MobiDBLite consensus disorder prediction 36 50 - -
Amo20g0335 380 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 372 IPR044557 GO:0003700|GO:0050793
Amo20g0335 380 MobiDBLite consensus disorder prediction 102 145 - -
Amo20g0335 380 MobiDBLite consensus disorder prediction 1 51 - -
Amo20g0335 380 Pfam Homeodomain 43 103 IPR001356 GO:0003677
Amo20g0335 380 SUPERFAMILY Homeodomain-like 39 107 IPR009057 -
Amo20g0335 380 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0335 Amo-Chr20 4407552 4408779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0335 1 375 Wox Gene Family AT2G33880 42.548 1.28e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Amo20g0335 Homeodomain 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0335 - - aip:107619964 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0335 20 4407552 4408779 Amo20g0335 20 4407552 4408779 ECH