Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0332 ATGAATAAGATCGAAGAAGAAGGCATGGTTATAGCTTCCCAATCCCAAACAGAGCTACCTTTAAATGAGAATGACTCTCAGGACATGGTTATATACCAAGTCCTGAACGAGGCTAGTAATAACCATCAGCAGCAGCAGCATGAAGCGGCTTCGTTCATGATGATGAGTAGCGGACAGCAACGGCGTGGCATGGAAGCAAAGAAGAACATAGCGAAGAAGCACTACAGAGGGGTGAGGAGGCGGCCTTGGGGGAAGTATGCGGCGGAGATAAGAGACTCGGCGAGACAGGGAGCAAGGATATGGCTTGGGACGTTTCAAACAGCGGAAGAAGCTGCCATGGCTTATGATAGAGCTGCTTTCAAGATGAGAGGTTCCAAGGCCTTGTTGAATTTCCCTGCTGAGGTTGTTGCAGCTGCTTCTGCCACTGCTTCTACTTCCACTCATACTTAG 450 0.4911 MNKIEEEGMVIASQSQTELPLNENDSQDMVIYQVLNEASNNHQQQQHEAASFMMMSSGQQRRGMEAKKNIAKKHYRGVRRRPWGKYAAEIRDSARQGARIWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFPAEVVAAASATASTSTHT* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0332 149 CDD AP2 73 133 IPR001471 GO:0003700|GO:0006355
Amo20g0332 149 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Amo20g0332 149 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Amo20g0332 149 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Amo20g0332 149 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Amo20g0332 149 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Amo20g0332 149 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Amo20g0332 149 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 10 142 - -
Amo20g0332 149 PANTHER DNA-BINDING DOMAIN 10 142 IPR044808 GO:0003700|GO:0009873
Amo20g0332 149 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0332 Amo-Chr20 4383482 4384170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0332 13 135 AP2-EREBP Transcription Factor Family AT4G17500 48.611 9.70e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo20g0332 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0332 K13433 - gmx:100811533 169.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0332 20 4383482 4384170 Amo20g0332 20 4383482 4384170 ECH