Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0331 ATGGACAGTCATAGTAATGATGCAAATTCTGAAGGGATTCTTGAGAATGTATGGGCCAAAATTATCAGCAATCAAAGAGGAGCCGATCATGTGAGAACATATGGTGATGGTGATGTTGCAGCAGAACAATCATGGGAAGAACTTCCACAACTTGATGGAAGAGACAACAATAACGGTTCAGTGGGAATTCTGCAGAGGCTTCCAAGCTTAGGGAGGTGGATATCAATGGGAGCAGATTTCTGGGAAGATGTTTTAGATGGAGTTGTTAACATTACACCAAATGATGCAGCAACAACAACAAACAATAACGAACAAGATTGTAATAAGAAGGTAGAACTAGAGAAGAGGGTGATGAAAACAGAGAAAAAAGTGGTGACAAAGCACTACAGAGGAGTAAGGAGAAGGCCATGGGGGAAATATGCGGCGGAGATTCGAGATTCGTCGAAGAAAGGAGCTAGAGTTTGGCTTGGAACATTTGAGACGGCTGAAGAGGCAGCATTGGCATATGATAAAGCTGCTTTGAGGATTAGAGGGCCAAAGGCATACCTCAATTTCCCATTTGACACTGTTTCAAAAGCTATAGAATTTGATCATCATTATTGTAGTAAGAGAGGGTCATCTGTGGTGTTGAATGAGCAACCTCCAACAAAGAAGGTAGCAGGAGGGTTTCATGATCATCATGAAGAAGTAGATGTTTTTGTGTTTCAGGATTTAGGAAGGACAACTCAGACAAGAGAAGCCCCCACCAACCACAACCATTCACCCTCTTCTCCTTGCCGTGGAACATTGCGGTCGCTCGCATTGCCCACGTTACCGTCGCGCGTCGCTCATATTGTTGGCTCTTTTCTTCGGTCTCTGGCCGTTGCTCACCTCGCCGTTGCTCACCTCTACGGTTGCGTCAACGAGGAAAGGAGGAGCCGAGGAGTGCTTACCATAGAGGTGAGCAACGACAAGGAGAGCAGAGACTGGGGACCGAAGGGAAGAGCTGACAATATGAGCGACGCGTGA 1008 0.4593 MDSHSNDANSEGILENVWAKIISNQRGADHVRTYGDGDVAAEQSWEELPQLDGRDNNNGSVGILQRLPSLGRWISMGADFWEDVLDGVVNITPNDAATTTNNNEQDCNKKVELEKRVMKTEKKVVTKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPFDTVSKAIEFDHHYCSKRGSSVVLNEQPPTKKVAGGFHDHHEEVDVFVFQDLGRTTQTREAPTNHNHSPSSPCRGTLRSLALPTLPSRVAHIVGSFLRSLAVAHLAVAHLYGCVNEERRSRGVLTIEVSNDKESRDWGPKGRADNMSDA* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0331 335 SUPERFAMILY DNA-binding domain 128 187 IPR016177 GO:0003677
Amo20g0331 335 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Amo20g0331 335 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Amo20g0331 335 ProSiteProfiles AP2/ERF domain profile. 128 186 IPR001471 GO:0003700|GO:0006355
Amo20g0331 335 MobiDBLite consensus disorder prediction 242 261 - -
Amo20g0331 335 SMART rav1_2 128 192 IPR001471 GO:0003700|GO:0006355
Amo20g0331 335 Pfam AP2 domain 128 178 IPR001471 GO:0003700|GO:0006355
Amo20g0331 335 CDD AP2 127 186 IPR001471 GO:0003700|GO:0006355
Amo20g0331 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 15 231 - -
Amo20g0331 335 Gene3D AP2/ERF domain 127 189 IPR036955 GO:0003700|GO:0006355
Amo20g0331 335 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0331 Amo-Chr20 4380132 4381698 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0331 13 197 AP2-EREBP Transcription Factor Family AT4G18450 45.213 2.69e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo20g0331 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0331 - - lang:109334345 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0331 20 4380132 4381698 Amo20g0331 20 4380132 4381698 ECH