Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0327 ATGAATACTCAACAATCGCGAGTGTTTATCGTGCTGCAATCATCACTAGAAATGGTGATTCACTTGTTCAGAGAAGCTTCAAATATAGGACTTGTAGATAAAGAATCAGTTTGGATAATCCCAGAGAGCATAACCAATCTAATTGACTCCATCAACAAGTCTTCCATTTCATACATGGAAGGAGCTATAGGAATCAAGAACTACTACTCTGAAGGAAACAACAAGTACCAAGATTTTGAGGCTCAGTTTCAGAGAACTTTCTGGCCAAGAAGCCCCGAAGAAGATAACCGAAAGCCTGGATTTTTTGCTTTGCAAGCATATGATAGCATTAGCATTGTGTCTCAAGCACTGGACAGAATGAGCAATGGCAAAAGCAGCACAAATACCTTACTAAGAGAAATACAGTCAAGCAAATTTTCTGGTTTAAGTGGCCATATTGAATTTGAAGATGGAAAACTGCTGCAGAATCCTATCTTGAGAGTAGTGAATGTGGTTGGGAAGAGTTACAAAGAGTTGTGCTTTTGGACTCAGCAACATGGATTCTCCACAAGCTTCCATGCAACAAGACAAGATGGTGGTAATGGTAACCATGTTTCAGAATGCTTCAATGCTGTACTTTGGCCTGGGAATTTGCAAAGGACACCAAAGGGATGGAAAATGCCTACTAAACAAAAACCTATGAAAATCGCGGTCCCAGGCAGAACTACATTTTCCAGGTTTGTCAAGGTTGATTATGCCAAGAATCAAAACCTTGATAACTATGATGGATTCTGCATCAAGATTTTTGAGCAGGTGCACAAAATTTTGGGGTATGATCTACCCTATAAGTTCCATGCTATCAATTGCACCTATCCTGATTTGGTTCAATTAGTCTATAACAAGAGTTATGATGCTGTTATTGGGGATATTACGATACTAGAGGAAAGATTGCCATATGTGGACTTCACTGTGCCATATGCAGAATCAGGATTGTCAATGTTAGTTCCAGCAAAGTCTGAAGAATCAGCATGGATGTTCACCAAGCCATTTACCTGGCAACTTTGGACAGTTACAGGAGCCATCTTGATCTATACAATGTTAGTAGTTTGGCTACTTGAGAAAGAACCTAATCCAGAGTTTCATGGCAATTGGAAGAGCCAGATCAGCACTGCTCTTTGGTTTACCGTCTCCTCTTTGTTCTTTGCTCACAGGGAGAAAATGTATAGAAAGTTAACTCGGGTGGTGATGGTATCATGGCTCTTCCTAGTTCTGATTCTTAATTCAAGCTACACTGCAAGTCTTTCTTCAATGCTCACAGTGAAGCAGCTGCAGCCAAATGTCACAGACATTGAGTGGCTGAAGAAGAACAACATGAAGATTGGTTGTGATGGTGACTCATTTGTTAGAAACTACCTAGAGGATGTGGAGAAGTTCAAGCCAGAAAACATAATCAACATTACCAGTGAAGACAGATATATTGATGCATTTGCAAATGGTAGCATAGTAGCTGCATTTCTTGAATTACCCTATGAAAAAGTATTCATTAGCGAATATTGTGATGGATACACTGCCTCCATTCCCAGAACTAGATTTGGAGGATTAGGCTTTATGTTCCAGAAAGGCTCCCCGGTGACAAGAGATGTTTCCAGAGCTATATTACATCTCTCAGAAAATGGAGAGCTGAAAAAGTTGGAAGAGGAATGGTTGTTTAGTGCATCACAGAAATGCTCCAACAATATGACCTCCAATGGCATGGAAAGCTTGAGTCTAAGAAGCTTGTGGATTCTATTCGTCATCTCCGGTGCCACTTCCACTATTTGTATGCTACTATCAGCAATGCCATGGCAAAAGTTGTCTCCAAAGTCAAGAATTGGCACCAGAACATAA 1866 0.403 MNTQQSRVFIVLQSSLEMVIHLFREASNIGLVDKESVWIIPESITNLIDSINKSSISYMEGAIGIKNYYSEGNNKYQDFEAQFQRTFWPRSPEEDNRKPGFFALQAYDSISIVSQALDRMSNGKSSTNTLLREIQSSKFSGLSGHIEFEDGKLLQNPILRVVNVVGKSYKELCFWTQQHGFSTSFHATRQDGGNGNHVSECFNAVLWPGNLQRTPKGWKMPTKQKPMKIAVPGRTTFSRFVKVDYAKNQNLDNYDGFCIKIFEQVHKILGYDLPYKFHAINCTYPDLVQLVYNKSYDAVIGDITILEERLPYVDFTVPYAESGLSMLVPAKSEESAWMFTKPFTWQLWTVTGAILIYTMLVVWLLEKEPNPEFHGNWKSQISTALWFTVSSLFFAHREKMYRKLTRVVMVSWLFLVLILNSSYTASLSSMLTVKQLQPNVTDIEWLKKNNMKIGCDGDSFVRNYLEDVEKFKPENIINITSEDRYIDAFANGSIVAAFLELPYEKVFISEYCDGYTASIPRTRFGGLGFMFQKGSPVTRDVSRAILHLSENGELKKLEEEWLFSASQKCSNNMTSNGMESLSLRSLWILFVISGATSTICMLLSAMPWQKLSPKSRIGTRT* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0327 621 Gene3D - 488 571 - -
Amo20g0327 621 SUPERFAMILY Periplasmic binding protein-like I 3 218 IPR028082 -
Amo20g0327 621 Pfam Bacterial extracellular solute-binding proteins, family 3 252 562 IPR001638 -
Amo20g0327 621 PANTHER GLUTAMATE RECEPTOR 3.4 3 614 - -
Amo20g0327 621 CDD GluR_Plant 225 562 - -
Amo20g0327 621 Gene3D - 1 98 - -
Amo20g0327 621 Gene3D - 109 226 - -
Amo20g0327 621 Pfam Ligand-gated ion channel 563 595 IPR001320 GO:0015276|GO:0016020
Amo20g0327 621 Gene3D - 336 471 - -
Amo20g0327 621 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 3 614 - -
Amo20g0327 621 SMART GluR_14 228 564 IPR001320 GO:0015276|GO:0016020
Amo20g0327 621 Pfam Receptor family ligand binding region 4 164 IPR001828 -
Amo20g0327 621 Gene3D - 227 335 - -
Amo20g0327 621 SUPERFAMILY Periplasmic binding protein-like II 202 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0327 Amo-Chr20 4340495 4342735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0327 3 603 Ion Channels AT2G29120 33.812 2.34e-114 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0327 - - gmx:100818619 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0327 20 4340495 4342735 Amo20g0327 20 4340495 4342735 ECH