Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0295 ATGCATACTCCTCCTCCTCCATCATCATCTTCTTCTTCTTCTAATTCTATTTGGGTATTGTCTAGCATAAAGCTTCAATTCTTTGCACGAATCAGAAGGTTCCTCCAATCAAAAGCGACACGAAAGCGCCGAAACCAACCAAGAAACAGAGCTGAGCAGAACAACAACGACAATAACAAGGTCGAAAAAGTTGTTGAAACGGTTCAAGTCATGGAGAAGCATGAGGAGGAGAAGGAAGAAGAGGAGGACTCTGCTATCATGTTGCAGAGGACAGTGAAGAAGCTTCACTTTGGAAGCTGGGAAGAGAAGGAGGTGGCAGCCAAGGATATTGGAAATTTGGCAAAAGAAGATTTGAAGGTTAGAAAGTTGATAACAGAACTCGGTGTGGTGCCTGTGTTGGTCTCTATGGTGGCTTCCGACGTGGCCACCCGTCGCAGAGCGGCGTTGGTGGCGTTGATCCACCTTGCTGATGGAACTTACACGAACAAGGCTATGATAGTGGAGGCAGGAATATTATCCAAGCTGCCAAACACAGTTGACAATGTAGATGAATCAACAATCAATGAATTTTCTGAGTTGCTGTTATCGTTGTCTTCACTAGCAAACACCCAATTCCATTTTCCTTCATTGGACTTTCTACCATCACTAAGACACATTCTTGAGTCAAACTCATCAAGCTTAGACACAAAAACATCATGTTTGGGTGCCCTATACAACTTTTCAAGCGTGTTAGAGAACGCGGGAGCTTTGGTTTCATGTGGGATTGTTCCTATTTTATTAGAACTATCCTCAAGAAAAGAAACTTCAGAGAAAGCATTGGCAAGTCTAGGGAACTTGTTAGTGAGCATGATGGGGAAGAAAGCAATAGAGAATAGTTGTTTAGTGCCAAAGAACTTCATTGAGATCTTGTCATGGGAAGACAAACCGAAATGCCAAGAGTTATCGGTTTATATATTGATGATCCTAGCGCATCAAAGTTCAAGTCAAAGGGAGAAAATGGCACAGGCTGGCATTGTTCCTGTGCTTCTTGAAGTGGTTCTGTTGGGAAGCTCTTTGGCTCAGAAGAGAGCATTGAAGCTATTGCAATGGTTCAAGGATGAGAGGCAAACCAAGATGGGGCCACATTCGGGGCCACAAACACCGAGGTTTGCATCGATGGGGTCACCGGTGAATCAAAGAGAAGCAACGGAAGGGAAGAAGATGATGAAGAGTTTGGTTAAACAAAGCTTGCATAGGAACATGGAGATTATTACTCACAGGGCTAATGCTGCTGGAGACTCTTCTAGATTTAAGTCATTGGTTATTAGCACTAGTTCTAAGAGTTTGCCTTATTAA 1335 0.4322 MHTPPPPSSSSSSSNSIWVLSSIKLQFFARIRRFLQSKATRKRRNQPRNRAEQNNNDNNKVEKVVETVQVMEKHEEEKEEEEDSAIMLQRTVKKLHFGSWEEKEVAAKDIGNLAKEDLKVRKLITELGVVPVLVSMVASDVATRRRAALVALIHLADGTYTNKAMIVEAGILSKLPNTVDNVDESTINEFSELLLSLSSLANTQFHFPSLDFLPSLRHILESNSSSLDTKTSCLGALYNFSSVLENAGALVSCGIVPILLELSSRKETSEKALASLGNLLVSMMGKKAIENSCLVPKNFIEILSWEDKPKCQELSVYILMILAHQSSSQREKMAQAGIVPVLLEVVLLGSSLAQKRALKLLQWFKDERQTKMGPHSGPQTPRFASMGSPVNQREATEGKKMMKSLVKQSLHRNMEIITHRANAAGDSSRFKSLVISTSSKSLPY* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0295 444 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 77 444 - -
Amo20g0295 444 MobiDBLite consensus disorder prediction 38 60 - -
Amo20g0295 444 Coils Coil 64 91 - -
Amo20g0295 444 SMART arm_5 117 157 IPR000225 GO:0005515
Amo20g0295 444 SMART arm_5 159 199 IPR000225 GO:0005515
Amo20g0295 444 SMART arm_5 242 281 IPR000225 GO:0005515
Amo20g0295 444 Gene3D - 51 379 IPR011989 -
Amo20g0295 444 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 77 444 - -
Amo20g0295 444 SUPERFAMILY ARM repeat 92 364 IPR016024 -
Amo20g0295 444 MobiDBLite consensus disorder prediction 373 390 - -
Amo20g0295 444 MobiDBLite consensus disorder prediction 370 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0295 Amo-Chr20 4060581 4064366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0295 77 412 U-box Gene Family AT1G27910 26.437 4.45e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0295 - - adu:107468248 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0295 20 4060581 4064366 Amo20g0295 20 4060581 4064366 ECH