Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0261 ATGCATCATGACCTGAACCCACCAGTAACACATACTGACCTTAATGCACATTCGATCTTTTTGACAGATGACTTTGCCGCTAAGATTGCTCAGACCACATTCCGGAATATCGTATCACGCTCTGAGGCAAACAAAGAGAGGAGAAAGAAATCTGAGTTGCCACCCCATGATGATCCTGAAACCAATGTCTATTGCTTTGGGGTGCTGTTGCTAGAGATCGTTTCTGGGAGATTACCTCACTCTGTAGAACAAGGCAGCCTTCTGGATTGGGCTGCTGGGTACTTGAACGACAAGGGAAACTTCAAATATCTGATTGATCCAACTCTGCAATCTGTCAAAGACAATGAACTTGATGTCATATGTGAGGTGGTCAAAGAATGTATCCAACCTGATCCAAGGTTAAGACCAACAATGAGAGAAATCGCAATCAAATTAAGGGAAGCTCTTAGAATATCACCTGAGCAAGCAGTTCCAAGATTGTCTCCACTTTGGTGGGCTGAATTGGAGATCTTGTCAGTGGAAGCCACTTAA 531 0.4369 MHHDLNPPVTHTDLNAHSIFLTDDFAAKIAQTTFRNIVSRSEANKERRKKSELPPHDDPETNVYCFGVLLLEIVSGRLPHSVEQGSLLDWAAGYLNDKGNFKYLIDPTLQSVKDNELDVICEVVKECIQPDPRLRPTMREIAIKLREALRISPEQAVPRLSPLWWAELEILSVEAT* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0261 176 SUPERFAMILY Protein kinase-like (PK-like) 1 143 IPR011009 -
Amo20g0261 176 Pfam Protein tyrosine and serine/threonine kinase 9 144 IPR001245 GO:0004672|GO:0006468
Amo20g0261 176 ProSiteProfiles Protein kinase domain profile. 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0261 176 PANTHER PROTEIN MALE DISCOVERER 2 1 176 - -
Amo20g0261 176 Gene3D Transferase(Phosphotransferase) domain 1 1 157 - -
Amo20g0261 176 PANTHER LRR RECEPTOR-LIKE KINASE 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0261 Amo-Chr20 3530387 3533057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0261 1 162 Receptor kinase-like Gene Family AT4G28490 30.114 6.78e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Amo20g0261 PK_Tyr_Ser-Thr 8.2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0261 - - adu:107468254 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0261 20 3530387 3533057 Amo20g0261 20 3530387 3533057 ECH