Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0260 ATGAATAATCCCACGGTAGTTGATCGGTTCTCTGGGTTCTACGATAACTGGATTTTGAAGCTCGAAGAGATCCTCCACCAGCTTCTCCACGTTTCCAACAACCACCACCTTTTCACCGAACAGGACCTTCAATCTCTGATTTCTAAAGTTACCACACACTTCAAGGAGTACTACACCGTGAAATGGAGTCTGGCACGCGAGGACGTTGTTGTCTTTTTTTCGCAGCCTTGGTTGACCCCTCTCGAAATTGCATACCTCTGGATCACGGGTTGGAAGCCTTCCACCGTCTTCAAGGTGCTGGAGTCTCTCAAAAAAGATAACTTATTTGGGATGACAGAAGAGCAACAGAGGAAGATAGGAGAGTTAAGGATGAGGATGAAGATGGAGGAGGAAAAGGTTGAGAGAGAGATGGAGAGGCAGCAGGTTGCCATGGCGAATAGCAAAATCGTGGAGCTGGCCAAGCTCTCCGGAAGAGCCACGTGGAAGAAACATAATAATGGAAAAGATCATGATGAGATGGTGCAGTTGGCGATGAAGGATGTGTTTGGGGGATTGGAGAGAATAATGAAAACTTCTGATTGTGCGAGGTTGAAGACCCTGAAAGGAATTTTGGACGTTCTTCGCACGATGCACTGGAGATTGCCATTGTCAAAAATGTTTGCCAGCGGGTACTACGAATGCTGGCCCAACTGCCGTTCAAGCGGAAGGTTTATTGGAGACGCCGACGATGGATACCGCGGGGATTGGGAGAGCTATAGCAGGTGCGGGATTTGA 774 0.4806 MNNPTVVDRFSGFYDNWILKLEEILHQLLHVSNNHHLFTEQDLQSLISKVTTHFKEYYTVKWSLAREDVVVFFSQPWLTPLEIAYLWITGWKPSTVFKVLESLKKDNLFGMTEEQQRKIGELRMRMKMEEEKVEREMERQQVAMANSKIVELAKLSGRATWKKHNNGKDHDEMVQLAMKDVFGGLERIMKTSDCARLKTLKGILDVLRTMHWRLPLSKMFASGYYECWPNCRSSGRFIGDADDGYRGDWESYSRCGI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0260 257 PANTHER - 5 210 - -
Amo20g0260 257 Pfam Seed dormancy control 25 101 IPR025422 GO:0006351|GO:0043565
Amo20g0260 257 ProSiteProfiles DOG1 domain profile. 7 236 IPR025422 GO:0006351|GO:0043565
Amo20g0260 257 Coils Coil 112 148 - -
Amo20g0260 257 PANTHER PROTEIN DOG1-LIKE 4 5 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0260 Amo-Chr20 3526082 3528129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0260 10 209 bZIP Transcription Factor Family AT3G12250 27.363 6.26e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0260 - - gmx:100808459 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0260 20 3526082 3528129 Amo20g0260 20 3526082 3528129 ECH