Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0252 ATGGAAGGTGTCAAGTTGGTTGCTTGGTTCTTCTCCTTGTTTATTTTGTGTTCGATGCCATTGGTTGTTGAGGGCACTGACAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTTGCTGCTTTGATGTCCATGAAGAATAAAATGAACGATGAATTGCACGTCTTGAATGGCTGGGATATTAATTCGGTTGACCCTTGCACTTGGAACATGGTTGGTTGCTCTGCCGAGGGTTATGTCATTTCCCTGGAAATGGCTAGTGCTGGTTTATCTGGAACTCTTTCGTCAGGAATTGGAAATTTGAGCCATCTCCGAACATTGTTACTGCAGAACAATCAGTTATCTGGTCCTATCCCGGCTGAAATAGGCAAGTTGTCAGAGCTTCAAACTCTAGACCTTTCCGGTAACCAGTTTGTTGGAGAAATTCCTAGTTCTTTGGGCTTATTGTCTCAACTAAGTTACTTGCGGCTCAGCAAAAATAATCTATCTGGACAGATCCCTCCACTTGTTGCTAACTTGACAGGCCTTTCATTCTTGGACTTGTCATTTAATAATCTCAGTGGTCCCACTCCAAAAATTTTGGCCAAAGGTTACAGTATTTCAGGAAATAACTTCCTTTGTACATCTCCTTCGGAACATTGTATGGACATTTCAAAACCACTAAATGATACAGGATCATCTCAGAAAGTCAAGAGTCATCACCAAAGGGTGATTTCTGTTGTTGTTGGCATCAGTTGCACATTTATAATTTCAGTGATGCTTGTGTGTTGGTTGCATTGGTACAGATCACGCATCCTCTATACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGCCATTTGAAGAGGTTCACCTTCCGTGAACTACAAATTGCTACTGGAAATTTCAGTCAAAAGAACATCCTTGGACAAGGAGGCTTTGGCATTGTCTACAAAGGATGCCTTACAAACAAAATGCTGGTGGCAGTGAAGAGGCTGAAGGATCCCAATTACACCGGAGAAATGCAATTTCAAACTGAAGTTGAGATGATCGGCTTGGCTGTGCATCGTAACCTTTTGCGTCTCTATGGATTTTGTATGACTCCAGATGAAAGGTTACTTGTTTATCCCTACATGCCTAATGGCAGTGTTGCTGATCGCTTGAGAGACACATGCCGAGAAAAGCCATCTCTGGACTGGAACAGGCGAATGCGAGTTGCTGTTGGCGCTGCACGCGGGCTTCTGTATTTACACGAGCAGTGCAACCCTAAAATAATCCACAGAGATGTTAAGGCTGCAAACATTTTGCTAGACGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGCCTTGCTAAGCTGTTGGATCAAAGGGATTCGCATGTCACCACCGCCGTGCGCGGTACAGTAGGCCACATTGCCCCGGAGTATCTCTCCACTGGACAGTCTTCTGAGAAAACAGATGTTTTTGGATTTGGCATATTACTTCTGGAGCTCATAACAGGACAAAAGGCACTAGATGCTGGGAATGGTCAAGTACAAAAGGGAATGATTCTTGATTGGGTTAAGACATTATTTGAGGAGAAGCGGCTAGAAGTGTTAGTTGATAGGGATCTAAGGGGATGCTTTGATCCAGTTGAGCTAGAAATGGCAGTGGAGTTGTCTTTACAGTGCACTCAGTCACTTCCGAGTCTGCGGCCGAAGATGTCGGAAGTCTTGAAGATTCTAGAAGGCCTGGTTGGGCAGTCGGCGCAGCCGGAGGAGTCACAAGGAGGGTCTAACTTATATGAAGAAAGAGCATGCAGTTTCTCCCAAAACTATAGTGATGTTCATGAAGAACCTTCCTTTGTTATTGAAGCCATTGAGCTTTCTGGTCCTCGGTGA 1863 0.4412 MEGVKLVAWFFSLFILCSMPLVVEGTDSLLSPKGVNYEVAALMSMKNKMNDELHVLNGWDINSVDPCTWNMVGCSAEGYVISLEMASAGLSGTLSSGIGNLSHLRTLLLQNNQLSGPIPAEIGKLSELQTLDLSGNQFVGEIPSSLGLLSQLSYLRLSKNNLSGQIPPLVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSPSEHCMDISKPLNDTGSSQKVKSHHQRVISVVVGISCTFIISVMLVCWLHWYRSRILYTSYVEQDCEFDIGHLKRFTFRELQIATGNFSQKNILGQGGFGIVYKGCLTNKMLVAVKRLKDPNYTGEMQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDTCREKPSLDWNRRMRVAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMILDWVKTLFEEKRLEVLVDRDLRGCFDPVELEMAVELSLQCTQSLPSLRPKMSEVLKILEGLVGQSAQPEESQGGSNLYEERACSFSQNYSDVHEEPSFVIEAIELSGPR* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0252 620 ProSiteProfiles Protein kinase domain profile. 297 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0252 620 SMART LRR_typ_2 101 124 IPR003591 -
Amo20g0252 620 SMART LRR_typ_2 125 149 IPR003591 -
Amo20g0252 620 SMART LRR_typ_2 173 196 IPR003591 -
Amo20g0252 620 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 620 - -
Amo20g0252 620 Pfam Protein kinase domain 298 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0252 620 SUPERFAMILY Protein kinase-like (PK-like) 281 575 IPR011009 -
Amo20g0252 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Amo20g0252 620 SMART serkin_6 297 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0252 620 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Amo20g0252 620 Gene3D Ribonuclease Inhibitor 35 216 IPR032675 -
Amo20g0252 620 Gene3D Transferase(Phosphotransferase) domain 1 373 580 - -
Amo20g0252 620 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Amo20g0252 620 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 620 - -
Amo20g0252 620 Gene3D Phosphorylase Kinase; domain 1 267 372 - -
Amo20g0252 620 SUPERFAMILY L domain-like 37 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0252 Amo-Chr20 3435390 3439013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0252 43 620 Receptor kinase-like Gene Family AT5G45780 73.322 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Amo20g0252 Pkinase 8.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0252 - - gmx:100810610 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0252 20 3435390 3439013 Amo20g0252 20 3435390 3439013 ECH