Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0251 ATGGATCAAGCCGCAAGTGAGGGGATTGGTGAGGTAATGGATCCTGTTCATGAAAGAGTTGATGATAATTTGAGTCATGAACCTGATGGGGCTGCAGTTGATGCAGTAGGTAGGGGTAGCTTGGGTGAGAGAGTCACTATAAGTGGAGAAGTTGGAACTTCAGAACAAAAGGGTAAGGATTTGGGATCAGATAAGGAGTTAAAGGTGGAACCTGAGGAAGTTGAGAGTGGGAAGAAGTGTGATTACCAAAAAAACAGTGAAACAATGTCTGAGGTTGATCAAGGAACTAGTTATAATTCAAGCAATTTGGTTAATCAGCAAGTGGTTGAAACCGTGGTTGTAATAGAGGCTGTTCAGAGTGAGTGTGTTAACAGGGACAGTATGAAATTGGAGCTGAAGGTAAATGAATCAGGGTTGAGCAAAGTATCTGTGAGAGCACCCAAAGGGGTTTCCGAAATGACAGATAAGAATTCTTGTGTGATTGATATAAGGTGCACCAACCACAAACGGTTTAGTGAGAGTTCAGAAGGTGAAAGGATTTGTAGGATTTGCCACCTTGCTTCTGGGAGACCATCAGATGCAACAGCTGTTGGAACTGCCAATGGTGCTACTAGTACTGATTTGATTCAGCTTGGTTGTTCATGTAAGGATGAGCTTGGCATTGCGCATATTCATTGTGCTGAGGCCTGGTTCAAGCTTAAAGGAAACAGGTACTTGTGTTGTTATCAATAG 732 0.4276 MDQAASEGIGEVMDPVHERVDDNLSHEPDGAAVDAVGRGSLGERVTISGEVGTSEQKGKDLGSDKELKVEPEEVESGKKCDYQKNSETMSEVDQGTSYNSSNLVNQQVVETVVVIEAVQSECVNRDSMKLELKVNESGLSKVSVRAPKGVSEMTDKNSCVIDIRCTNHKRFSESSEGERICRICHLASGRPSDATAVGTANGATSTDLIQLGCSCKDELGIAHIHCAEAWFKLKGNRYLCCYQ* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0251 243 ProSiteProfiles Zinc finger RING-CH-type profile. 173 243 IPR011016 GO:0008270
Amo20g0251 243 SMART ringv_2 180 241 IPR011016 GO:0008270
Amo20g0251 243 MobiDBLite consensus disorder prediction 21 79 - -
Amo20g0251 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 243 IPR013083 -
Amo20g0251 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 237 - -
Amo20g0251 243 MobiDBLite consensus disorder prediction 57 79 - -
Amo20g0251 243 PANTHER ZINC FINGER, RING-CH-TYPE 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0251 Amo-Chr20 3427563 3428294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0251 161 237 C3H Transcription Factor Family AT5G05830 41.558 1.01e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0251 - - gmx:100791720 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0251 20 3427563 3428294 Amo20g0251 20 3427563 3428294 ECH
Amo13g5703 13 159022942 159025594 Amo20g0251 20 3427563 3428294 PCT
Amo20g0251 20 3427563 3428294 Amo13g5703 13 159022942 159025594 PCT