Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0250 ATGGCATGCTTAGTTCTGAGTGAAGTGAACATCAGCACAGATGATGAACATGCTCTTCTTGCATTCAAGTCTTCCATTACTTCAGACCCCAATAATCTCATGCTTAGTAATTGGTCAACCTCATCATCATCATCTTCTTCTCTGTGCAACTGGGTTGGTGTTACATGTGATTTGGGTAATGGAAGAGTGAAGTCTTTGAATCTCAGCAACATGGGGCTTGTAGGTACCATTCCTCCACAAGTGGGGAGCCTWTCATTCCTTGAGGAGCTTGATCTCAAAGGAAACAGCTTCCATGGTGAGTTGCCACATGAATTGTATCAGTTGCAACAACTGAAGTTGCTCAACCTGAGTTATAACAACTTTGGTGGTTTCATTTTGGACTCAATATCCAACTTTTCTAAGTTGGTTTACTTGGACTGTTCATCAAGTTTCAGCAAAGGATCCAATACTATTCTACCAGTCATTGGACAGCTTCAACATTTGAAGGTTTTGAGGTTAGATAACAACTCTCTTTCAGGATTCATTCCACCAGCCATATCTAATCTCTCTTCACTTGAAGTCATTAGCCTTGGTTATAACACCTTGTCAGGTGAGATTCCAGTGTCTCTGTTGAACATCTCTTCATTGAGGCATTTCAGTGCTGGCTACAACAATTTAAATGGAACTCTCCCTAAAGAGTTGTGCCATCAGCTTCCTCAACTTGAATTCCTTCTTTTGGATTTTAATCAATTTGAGGGAACTATTCCAGCATCAATTGGTAACTGCACATCTCTGGTACTATTAAGTTTATCCAATAACTTTTTCACAGGTCCAATACCCATGGAGATTGAAAATCTTGGTAAATTTGAGCATCTTGCAGTGGGGTTTAACGATTTGAGTGGACCAATTCCATCAAAGATCTTCAACATTTCAACATTGAAATACTTGTATCTTTCATACAACTCTCTCTCAGGTGTTRTACCATCAGAAATGGGGTATACTCTGCCSAYCTTGGTGCAACTACACTTAACTGGGAACAAGCTTGTTGGAAGCATTCCAAATGGTTTATTCAATGCTACTTTGCTTACTAAAATTGACTTGAGTGAGAATCAATTCAATGGACTCATGCCTACCGGATTTCGATATCTATCAATCCTTGAAGTTCTTCATATAGGTGGCAATAATTTGACAAGTTCTCATGAACTTGAATTCCTTACATCCTTGACAAGTTWTACACAGTTGAAGCGTATTGTAGTAACTGGCAATCCTTTAAAGGCGAGTCTTCCTAAGTCGATTGGAAARTTATCAAAGTCTCTAGAACTTTTTCAAGCAGATCTCTGTAAAATTTATGGCAACATTCCATTGGAAATAGGAAACATAAGTAGCTTGTTGAATTTAAATTTGTATGGGAATGATATAAGTGGACCAATTCCTACTACAATTAAAGGGTTACAGAAGCTTCAGTCTTTGAATTTGAGCTACAATGAATTGCAGGGATCCATCATAGATGAGCTTTGTGAAATTGGGAGCTTAAGTGTGCTGTCTCTATCAAGTAATAAGCTATCTGGAGTTATACCAACATGCTTGGGAAATATGGCCTCTCTTAGAATCGTTTACATGGATTCTAACAAATTGATRTCAGAGATACCATCTTCTTTTTGGAATCTCAAGGATGTCTTAGAGGTAAATTTATCATCTAATGCTCTTGTTGGAGAACTTCCATATGATATAGGAAGATTGAGAGCTCTGGTTCTATTGGATCTATCAAAAAATGAGTTTTCAGGCAACATTCCTACAACCATAAGTTCCTTGGGAACSCTGCAAAATTTGTCCCTGGCAAGCAACAAATTTCAAGGGTCTATTCCTGRGTCGTSCGGCGAAATGGTAAGCTTAAGCTCACTGGACTTATCTCGAAATCTTTTGTCAGGTGCGATTCCAAAATCCTTAGAGTCACTTGTTTATCTTAAATACATCAACTTGTCTTATAATAAATTGCAAGGAGAGATTCCTAATGATGGACCATTTGTAAATTTCACTGCTCAATCTTTCATGCATAATGAAGCACTTTGTGGTAATCCTCGCCTATTGGTCCCTCCATGTTCTAAGAAAGATAGGCAAAGATCAAGGACAATGTTGCTTTTGWTCAAATGCATTCCACCTATAGTTGTGTCAATCATTTTGGTTGTTGCATTCATAGTAGTTCTGCAATGTAAGAGAAAAAATGTTAAAACTCGTCATGAGAGAAATTCATCAACTTTGGAAACAAGAAGGCTTTCCTACTATGAACTTGTACGAGCAACTAATGGATTTAGTGAGAGTAATTTAATTGGAAAGGGMGGATTTGGTTCTGTATATCAAGGGAAGCTCTCTGGTGGGTTGATAGTTGCAATCAAAGTGCTMGATTTGGATTCAGAAGAAACAGCACACAGTTTTGAAGTGGAATGCAATGCAATGCGRAATCTACGCCATCGAAATCTTGTTAAGATTATTAGCAGTTGTTCAAATGATGATTTCAAATCCTTGGTGATGGAGTTTATGCCAAATGGAAGTCTTGACAAATGGTTGTACTCACATGAGTACTGTTTAGATTTCTTTGAAAGGTTGAGTATAATGTTAGATGTGGCATCTGCATTGGAATATCTWCATCATGGTTTTTCAACTCCAGTTGTTCATTGTGACTTGAAGCCTAGCAATGTCSTGTTAGATGAAGACATGGTGGCACATGTAAGTGATTTTGGCATTGCTAAACTCTTGGATAAGGGACAATCTAAAGTTCATACAAAGACCTACTTYGCCACTCTTGGCTATGTTGCACCAGAGTATGGATCTATGGGAATTATTTCTGTCAAAGGAGATGTGTATAGCTATGGAATTATGTTAATGGAAGTCTTCACAAGAAAGATGCCTACYGATGATATGTTTGCTGCAGAATTGAGCTTGAAAAGTTGGATTAACCAATCACTGCCAAATTCAATCATAGAAGTTGTYGATTACAATTTAGTACAATTATATGGTGAACAAATTGATAATATATTGCCCCATATATCATCTATATTAGAATTAGCTTTGAGTTGTTGTGTAAATCCACCTGAAGAACGAATTACAATGACAGATGTAGTTGTGTCATTAACCAAGATCAAGAATTTGTTCACACAAGAAAGCTAA 3144 0.3718 MACLVLSEVNISTDDEHALLAFKSSITSDPNNLMLSNWSTSSSSSSSLCNWVGVTCDLGNGRVKSLNLSNMGLVGTIPPQVGSLSFLEELDLKGNSFHGELPHELYQLQQLKLLNLSYNNFGGFILDSISNFSKLVYLDCSSSFSKGSNTILPVIGQLQHLKVLRLDNNSLSGFIPPAISNLSSLEVISLGYNTLSGEIPVSLLNISSLRHFSAGYNNLNGTLPKELCHQLPQLEFLLLDFNQFEGTIPASIGNCTSLVLLSLSNNFFTGPIPMEIENLGKFEHLAVGFNDLSGPIPSKIFNISTLKYLYLSYNSLSGVXPSEMGYTLPXLVQLHLTGNKLVGSIPNGLFNATLLTKIDLSENQFNGLMPTGFRYLSILEVLHIGGNNLTSSHELEFLTSLTSXTQLKRIVVTGNPLKASLPKSIGKLSKSLELFQADLCKIYGNIPLEIGNISSLLNLNLYGNDISGPIPTTIKGLQKLQSLNLSYNELQGSIIDELCEIGSLSVLSLSSNKLSGVIPTCLGNMASLRIVYMDSNKLXSEIPSSFWNLKDVLEVNLSSNALVGELPYDIGRLRALVLLDLSKNEFSGNIPTTISSLGTLQNLSLASNKFQGSIPXSXGEMVSLSSLDLSRNLLSGAIPKSLESLVYLKYINLSYNKLQGEIPNDGPFVNFTAQSFMHNEALCGNPRLLVPPCSKKDRQRSRTMLLLXKCIPPIVVSIILVVAFIVVLQCKRKNVKTRHERNSSTLETRRLSYYELVRATNGFSESNLIGKGGFGSVYQGKLSGGLIVAIKVLDLDSEETAHSFEVECNAMRNLRHRNLVKIISSCSNDDFKSLVMEFMPNGSLDKWLYSHEYCLDFFERLSIMLDVASALEYLHHGFSTPVVHCDLKPSNVXLDEDMVAHVSDFGIAKLLDKGQSKVHTKTYFATLGYVAPEYGSMGIISVKGDVYSYGIMLMEVFTRKMPTDDMFAAELSLKSWINQSLPNSIIEVVDYNLVQLYGEQIDNILPHISSILELALSCCVNPPEERITMTDVVVSLTKIKNLFTQES* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0250 1047 Gene3D Ribonuclease Inhibitor 146 228 IPR032675 -
Amo20g0250 1047 Gene3D Ribonuclease Inhibitor 229 327 IPR032675 -
Amo20g0250 1047 Gene3D Ribonuclease Inhibitor 11 145 IPR032675 -
Amo20g0250 1047 SMART serkin_6 763 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0250 1047 SUPERFAMILY L domain-like 35 403 - -
Amo20g0250 1047 Pfam Leucine Rich Repeat 110 132 IPR001611 GO:0005515
Amo20g0250 1047 SMART LRR_typ_2 328 352 IPR003591 -
Amo20g0250 1047 SMART LRR_typ_2 84 108 IPR003591 -
Amo20g0250 1047 SMART LRR_typ_2 621 645 IPR003591 -
Amo20g0250 1047 SMART LRR_typ_2 376 399 IPR003591 -
Amo20g0250 1047 SMART LRR_typ_2 525 548 IPR003591 -
Amo20g0250 1047 SMART LRR_typ_2 573 597 IPR003591 -
Amo20g0250 1047 SMART LRR_typ_2 501 524 IPR003591 -
Amo20g0250 1047 SMART LRR_typ_2 353 375 IPR003591 -
Amo20g0250 1047 SMART LRR_typ_2 158 182 IPR003591 -
Amo20g0250 1047 SMART LRR_typ_2 231 255 IPR003591 -
Amo20g0250 1047 SUPERFAMILY Protein kinase-like (PK-like) 740 1036 IPR011009 -
Amo20g0250 1047 Gene3D Ribonuclease Inhibitor 328 702 IPR032675 -
Amo20g0250 1047 Pfam Protein kinase domain 764 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0250 1047 Pfam Leucine rich repeat N-terminal domain 14 57 IPR013210 -
Amo20g0250 1047 ProSiteProfiles Protein kinase domain profile. 763 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0250 1047 Gene3D Phosphorylase Kinase; domain 1 743 838 - -
Amo20g0250 1047 PANTHER - 108 1043 - -
Amo20g0250 1047 PANTHER - 6 294 - -
Amo20g0250 1047 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 108 1043 - -
Amo20g0250 1047 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 6 294 - -
Amo20g0250 1047 ProSitePatterns Protein kinases ATP-binding region signature. 769 791 IPR017441 GO:0005524
Amo20g0250 1047 Pfam Leucine rich repeat 160 219 IPR001611 GO:0005515
Amo20g0250 1047 Pfam Leucine rich repeat 599 658 IPR001611 GO:0005515
Amo20g0250 1047 SUPERFAMILY RNI-like 327 664 - -
Amo20g0250 1047 Gene3D Transferase(Phosphotransferase) domain 1 839 1046 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0250 Amo-Chr20 3422417 3426204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0250 424 682 Receptor kinase-like Gene Family AT3G47570 31.154 8.76e-27 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo20g0250 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0250 - K13420 mtr:MTR_8g465340 1055.05