Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0249 ATGGCCAACCCATGGTTTCATGTCTCTGTTTTCTTCCTCTCTTTTTATTACACCTTTGCTTTGTTATCTACTGATGATGAATCTGCTCTTCTTGCATTCAAATCCTCCATTACTTCAGACCCAAATCACATGCTTGGTAACTGGTCAACCTCTTCATCATCTTCTTTATGCAACTGGGTTGGTGTCATTTGCGATTCGGACAACGGAAGAGTGAAGTCTCTGAATCTTAGTAACATGGGTCTCGTAGGTACCATTCCCCCTCACGTGGGGAACCTCTCTTTCCTTGAGGAGCTTGACCTCAAAGGCAACAACTTTCATGGTATGTTGCCGCAGGAGATGTTTTCTTTGCAACAACTAAGGTTGCTCAACTTGAGTTCCAACGCGTTTGGTGGTTCCATTCCTCAATCTGTGTCCAGCTTGTCCAACTTGGTCGAATTCGATTGTTCATCAAATCTCATCAATGGAACTATTCCACCCGTGATTGGCCAACTTCGCCAATTGAAGCTCTTCAATTTTGAGAATAACTCACTTTCTGGAATTATACCACCAACAGTTTCCAACCTCACTTTGCTTGAAGTATTCAACCTTGGTTCTAACTTCATATCAGGAGAAATTCCAAGAGAGGTGGGTGATCTTACTAAACTAAGGAGAATGAGATTTGATCACAATAAGCTTAGTGGCAAAATTCCAGCAACATTATTCAACATGTCAGTGTTGTATGATTTCATTCTTCACTTCAATGATCTRTCTGGCACTCTTCCATCAAACATTTGTCAAGGCCTTCCCCAACTTTCTTACCTTTATCTCAACGAAAATGATCTCTCTGGTAAGATGCCAACTGTTTGGCATAACTGCCAAGAGTTGATCCATGTTAATCTATCCGTCAATGGTTTCGATAAAGGTCCCATGCCAAGCGATTTCGGGAACTTGACTAAGCTTCAGTATTTATATCTTGATGATAATAACTTGGAAGGTGAGGTTCCATTCTCCCTTTTAAACATCTCTTCTTTGGTGATAATGAGCCTTATGGAGAACAAGTTAAAGGGGCAGCTTCCAAGTGATATGTGTCATRTGCTCCCTCAACTGGAATGTTTGTACCTAGATACCAATCAATTTGAAGGGATCATTCCAAGATCAATTAGCAGATGCACACAACTCAAAGTTTTAAGACTAATGTATAACCAGTTTACAGGTACCATACCAGGTGAGCTTGCTGATCTGAACAATCTTCAGTATCTTATGCTTGGATTTAACAAATTGAGTGGAACTATTCCRCTAAAGCTTCTGAATAGTACAGCTTTGAGATTGTTGTATCTTTCSTACAATTCTCTCTCAGGCACTCTTCCATCAGACAAAGGCTATAACCTTCCTAACCTGGATCAACTGCACTTYACTGGGAACAAATTTGTTGGAACCATTCCAAGTGGTTTATTCAATGCTACTTTGCTCACTAAACTGGACTTGAGTGAGAATCAATTCAGRGGAGTCATGCCAGCTGCGTTTCGAGATCTASCCATACTCGAAGTTCTCCATATAGGTGGCAATAACTTGACAACCGATAATGATTCTCATGAACTCGACTTCCTTACTTCCTTGACAAGTTCTACACATTTGAGAAGGATAATCCTATCTAACAATCCTTTAAATGCAACTCTTCCTAAATCAATTGGAAACTTGTCCCAATCTTTGGTACTCTTTCAAGCAGATAATTGTGGAATCTATGGCAACATTCCAATGGAAGTAGGAAACATAACTAGCCTGTGGAATTTGAATTTATATGGGAATAATATATCTGGACCAATTCCTACTACAATCAAAAGGTTACAGAACCTTCAGTCTTTGAATCTGAGCTACAATGGATTGCAGGGATCCATCATTGATGAGCTTTGTGAAATCATGAGTTTAAGTGTGCTAGCTTTATCAAGCAACAAGCTTTCTGGAGCAATACCAGCATGCTTGGGAAATATGGCTTCTCTTAGAAAGGTTTACATGGATTCTAATAAATTGAACTCGGGGATTCCATCTTCTTTTTGGAATCTCAATGACATCTTAGAGGTGAACCTGTCCTCCAATGCTTTAACTGGACAACTTTCACCAGGGATAGAAAAATTGAGAGCTCTTGTACTATTGGATCTATCAAGAAATGACATTTCAGGTGACATTCCTGCAATAAGTTCACTAGCTCTGCAAAATCTTTCCTTGGCAAGCAACAAGTTGCAAGGTTCCATTCCTGAATCACTTGGTKAGTTGGTAAGCTTAAACTCTTTGGACTTGTCTCAAAATCTTTTGTCTGGTTCCATTCCAAAATCCTTAGSGTCCCTTACTTTTCTTAAATACATCAACTTGTCCTACAATAACTTGCAAGGAGAGATTCCCAGTGGTGGACCTTTTGCKAATTTCACTGCTCAATCTTTCATGCATAATGAAGCACTCTGTGGTAACCCTCGCTTACAAGTCCCTCCATGTGCTAAACAAGATGGCAAAAGTTCAAGGCTAAAACTGATTTTAGCCATTTGCATACCCCTTGTAKTAGTGTTAATCATTTTGATTCTTGCATYCATAATTGTTCGCCGACATAGAATAAAAGATGSMGAGAATCCAGCTGAAAAGAATTCATCAGACTTGGGAGCAGCAAAAAGGATTTCCTACTATGAACTTGTCCAAGCAACCAATGGATTTAATGAGAGTAACTTAATTGGAAAGGGAGGTTTRGGTTCTGTGTATCAAGGCATGCTCTCTAGTGGYATGATAGTTGCCATTAAAGTGATTAACGTGGACTTGGAAGCAACATCCAAGAGCTTTGATGCAGAATGCAATGCAATGCGCAATTTACGCCATCGAAATCTTGTTAAGGTTATCACTAGTTGCTCAAATGATGAGTTCAAATCTTTGGTGATGGAATTCATGCCAAATGGAAGCCTGGACAAATGGTTGTATTCACATAACTATTGCCTAGATTTCTTGCAAAGGTTGAATATAATGTTGGATGTGGCATCTGCATTGGAATATCTTCATTATGGTTCTTCAATACCAGTTGTTCATTGTGATCTGAAGCCTAGTAATGTCTTACTAGATCAAGAAATGGTTGCACATGTTAGTGACTTTGGCATTGCCAAGCTCTTGGATGAAGGACAATCCATAACACATACTAAGACCATGGCTACACTAGGCTATGTTGCACCAGAATATGGATCTAAAGGAATTATTTCAATCAAAGGSGATGTYTACAGCTATGGAATCATGCTAATGGAAGTATTCACAAGAAAAATGCCAACAGATGATATGTTTGCTGCAGAGTTGAGCTTGAAAAGTTGGATCAACAACTCAATGCCAYATTCAGTGATGGAAGTTGTGGACTCTAATTTAATACAACTATATGGTGATGAAGATATTGATGTTGTATTGCCTCATATATCATCTGTGTTGAGATTAGCTTTGAGTTGTTGTYCAGATTCAGCTGAAGAACGAATTAAAATGACAGATGTGGTTGCAGCATTAACCAAGATCAAGAATGAGTTCACCTTAATGAAAGAATGA 3537 0.3882 MANPWFHVSVFFLSFYYTFALLSTDDESALLAFKSSITSDPNHMLGNWSTSSSSSLCNWVGVICDSDNGRVKSLNLSNMGLVGTIPPHVGNLSFLEELDLKGNNFHGMLPQEMFSLQQLRLLNLSSNAFGGSIPQSVSSLSNLVEFDCSSNLINGTIPPVIGQLRQLKLFNFENNSLSGIIPPTVSNLTLLEVFNLGSNFISGEIPREVGDLTKLRRMRFDHNKLSGKIPATLFNMSVLYDFILHFNDLSGTLPSNICQGLPQLSYLYLNENDLSGKMPTVWHNCQELIHVNLSVNGFDKGPMPSDFGNLTKLQYLYLDDNNLEGEVPFSLLNISSLVIMSLMENKLKGQLPSDMCHXLPQLECLYLDTNQFEGIIPRSISRCTQLKVLRLMYNQFTGTIPGELADLNNLQYLMLGFNKLSGTIPLKLLNSTALRLLYLSYNSLSGTLPSDKGYNLPNLDQLHFTGNKFVGTIPSGLFNATLLTKLDLSENQFRGVMPAAFRDLXILEVLHIGGNNLTTDNDSHELDFLTSLTSSTHLRRIILSNNPLNATLPKSIGNLSQSLVLFQADNCGIYGNIPMEVGNITSLWNLNLYGNNISGPIPTTIKRLQNLQSLNLSYNGLQGSIIDELCEIMSLSVLALSSNKLSGAIPACLGNMASLRKVYMDSNKLNSGIPSSFWNLNDILEVNLSSNALTGQLSPGIEKLRALVLLDLSRNDISGDIPAISSLALQNLSLASNKLQGSIPESLGXLVSLNSLDLSQNLLSGSIPKSLXSLTFLKYINLSYNNLQGEIPSGGPFANFTAQSFMHNEALCGNPRLQVPPCAKQDGKSSRLKLILAICIPLVXVLIILILAXIIVRRHRIKDXENPAEKNSSDLGAAKRISYYELVQATNGFNESNLIGKGGLGSVYQGMLSSGMIVAIKVINVDLEATSKSFDAECNAMRNLRHRNLVKVITSCSNDEFKSLVMEFMPNGSLDKWLYSHNYCLDFLQRLNIMLDVASALEYLHYGSSIPVVHCDLKPSNVLLDQEMVAHVSDFGIAKLLDEGQSITHTKTMATLGYVAPEYGSKGIISIKGDVYSYGIMLMEVFTRKMPTDDMFAAELSLKSWINNSMPXSVMEVVDSNLIQLYGDEDIDVVLPHISSVLRLALSCCXDSAEERIKMTDVVAALTKIKNEFTLMKE* 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0249 1178 Pfam Leucine rich repeat 360 420 IPR001611 GO:0005515
Amo20g0249 1178 Pfam Leucine rich repeat 729 787 IPR001611 GO:0005515
Amo20g0249 1178 Pfam Leucine rich repeat 483 533 IPR001611 GO:0005515
Amo20g0249 1178 SMART LRR_typ_2 310 334 IPR003591 -
Amo20g0249 1178 SMART LRR_typ_2 656 679 IPR003591 -
Amo20g0249 1178 SMART LRR_typ_2 261 284 IPR003591 -
Amo20g0249 1178 SMART LRR_typ_2 704 731 IPR003591 -
Amo20g0249 1178 SMART LRR_typ_2 536 559 IPR003591 -
Amo20g0249 1178 SMART LRR_typ_2 750 774 IPR003591 -
Amo20g0249 1178 SMART LRR_typ_2 212 236 IPR003591 -
Amo20g0249 1178 SMART LRR_typ_2 92 116 IPR003591 -
Amo20g0249 1178 SMART LRR_typ_2 359 383 IPR003591 -
Amo20g0249 1178 SMART LRR_typ_2 407 431 IPR003591 -
Amo20g0249 1178 SMART LRR_typ_2 456 480 IPR003591 -
Amo20g0249 1178 SMART LRR_typ_2 481 503 IPR003591 -
Amo20g0249 1178 SMART LRR_typ_2 608 632 IPR003591 -
Amo20g0249 1178 Pfam Protein kinase domain 894 1163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0249 1178 SMART serkin_6 893 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0249 1178 Gene3D Ribonuclease Inhibitor 23 185 IPR032675 -
Amo20g0249 1178 SUPERFAMILY Protein kinase-like (PK-like) 876 1166 IPR011009 -
Amo20g0249 1178 ProSiteProfiles Protein kinase domain profile. 893 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0249 1178 Gene3D Ribonuclease Inhibitor 524 824 IPR032675 -
Amo20g0249 1178 SUPERFAMILY L domain-like 565 815 - -
Amo20g0249 1178 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 116 182 - -
Amo20g0249 1178 Gene3D Ribonuclease Inhibitor 186 356 IPR032675 -
Amo20g0249 1178 Gene3D Ribonuclease Inhibitor 357 523 IPR032675 -
Amo20g0249 1178 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1012 1024 IPR008271 GO:0004672|GO:0006468
Amo20g0249 1178 SUPERFAMILY L domain-like 44 377 - -
Amo20g0249 1178 Gene3D Phosphorylase Kinase; domain 1 875 968 - -
Amo20g0249 1178 SUPERFAMILY RNI-like 302 561 - -
Amo20g0249 1178 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Amo20g0249 1178 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 164 299 - -
Amo20g0249 1178 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 22 146 - -
Amo20g0249 1178 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 300 401 - -
Amo20g0249 1178 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 389 1175 - -
Amo20g0249 1178 Gene3D Transferase(Phosphotransferase) domain 1 969 1177 - -
Amo20g0249 1178 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 22 146 - -
Amo20g0249 1178 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 164 299 - -
Amo20g0249 1178 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 300 401 - -
Amo20g0249 1178 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 116 182 - -
Amo20g0249 1178 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 389 1175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0249 Amo-Chr20 3416144 3421389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0249 18 663 Receptor kinase-like Gene Family AT3G47570 32.268 7.35e-76 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo20g0249 Pkinase 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0249 - K13420 gmx:100784397 1142.49