Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0248 ATGCTTCGTCCAGCCACCGCCGTCGAAGCCACCGCCTTGCTTGCCGGTCGTCTCCGGCGCTGTTCGAACTTCGAAGCCACTGTCGTCGCTGCAACTGGTCTTGCCTCGTTCCTCCATCGCGCAACCACTATCCCGCCACGTCGCCTCTGTTCCACCGCGTCAGCCCCACCGTCGTGCTCCTTGTTCCGCTCTGTGCTCTGTCTTGAAGGATCTAGTTCGGTTCTGAGAATGGTGACACTGAACTATGCAACTGTGGTCAGGGAAGTAAAAGCATATTTGAAAAAGGGTGTTGCAGCAAAGGAATTGCAGTCACATATTGCTGCATTTCCTGTATCTGCTCAGGAGAAGATAAATGCACTTCTTGAAAGATTATTTGATGTCGTCGAAAAGGCGTTTGGAAAAGAAGCTACTAAGAGGAAGAATCACCTTGCTGGTGCAGTTGCTGGAGATGACGAGGGATCGCAGCTGTTATTACTCAATGCTGCTGAGGAGTTCTGTTACAAGAAAGGTAGCAATGAGTTGAATGAGGTTGCACTTATTTTGAAAGCCCTCTATGATGTTGATTTGGTGGAGGAAGAGCACGTCGTGCATTGGTATTCAAAGGGACTAAAGGGTGATAAGAAGGACTCTCAGATATGGAAGAATGCTCAACCATTCATAGATTGTCTTTGGAATGCTGAATCAGAATCGGAGGAAGAATGA 702 0.4829 MLRPATAVEATALLAGRLRRCSNFEATVVAATGLASFLHRATTIPPRRLCSTASAPPSCSLFRSVLCLEGSSSVLRMVTLNYATVVREVKAYLKKGVAAKELQSHIAAFPVSAQEKINALLERLFDVVEKAFGKEATKRKNHLAGAVAGDDEGSQLLLLNAAEEFCYKKGSNELNEVALILKALYDVDLVEEEHVVHWYSKGLKGDKKDSQIWKNAQPFIDCLWNAESESEEE* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0248 233 Pfam eIF4-gamma/eIF5/eIF2-epsilon 155 233 IPR003307 GO:0005515
Amo20g0248 233 SMART 542_3 141 229 IPR003307 GO:0005515
Amo20g0248 233 CDD W2_eIF5 85 231 - -
Amo20g0248 233 ProSiteProfiles W2 domain profile. 65 233 IPR003307 GO:0005515
Amo20g0248 233 SUPERFAMILY ARM repeat 82 227 IPR016024 -
Amo20g0248 233 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 74 233 IPR045196 GO:0003743|GO:0006413
Amo20g0248 233 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 74 233 - -
Amo20g0248 233 Gene3D - 79 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0248 Amo-Chr20 3406410 3407376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0248 84 226 Eukaryotic Initiation Factors Gene Family AT1G77840 48.611 9.39e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0248 K03262 - ahf:112778866 323.939