Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0243 ATGGCCACTTCCGCCGCCGCCACAACTGCCGCAGCGCCACGCCAGCTGTCACAGAAGGAGCAGGACATCCAGATGATGCTTGCTGCTGAGGTCCACCTCGGAACCAAAAATTGCGACTTCCAGATGGAACGCTACGTCTTCAAACGCCGTAATGATGGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTTGCTATCGAGAACCCGCAGGACATCATTGTTCAGTCTGCTAGGCCATATGGTCAGAGAGCTGTCCTTAAGTTTGCACAATACACTGGTGCGAATGCAATTGCTGGAAGGCACACTCCTGGAACATTCACTAATCAAATGCAAACATCCTATAACGAGCCTCGTCTACTCATTCTGACTGATCCAAGGACTGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAATATTCCAACCATTGCCTTCTGTGACACCGATTCTCCGATGCGCTATGTTGATGTTGGCATTCCTGCCAATAACAAGGGGAAGCACAGTATTGGTTGTCTGTTTTGGTTATTAGCAAGGATGGTTCTGCAGATGAGGGGTACTATTCGGCCGGGGCTTAAGTGGGACGTGATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAGGAGGAATTACCAGCTGCCCCAGAATATGCCATTCAAGATTTTGGTGCTGCTGGCATTGCCGGCTTCCCCGCAGCTGATGGGGAATGGGGGCTGTTACAGCTGAACAATCCTGGACTGAACCAGTTCCTCAGCAACCCATTGCAGCTGCTCCTGCTAACTGGGCCCCAGACGCCGCTGCAGGTGATTGGGAGCCAGTTCCAGCTCCACAGGCATCCGTTCCTGCACCTGGAGGTGTTGCTCCCACTGGCTGGGACTAGGCATCGTGTTTGGAATTTTGTTTCTATGTTTTCTTTGCTTCCTGAGCAATTTTCCTTCCGGGATTATTTCTTTAGGAAACATACATATTTAGTATTTTGTAGTCTTGGTATTGAGTTTTAA 1047 0.489 MATSAAATTAAAPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEELPAAPEYAIQDFGAAGIAGFPAADGEWGLLQLNNPGLNQFLSNPLQLLLLTGPQTPLQVIGSQFQLHRHPFLHLEVLLPLAGTRHRVWNFVSMFSLLPEQFSFRDYFFRKHTYLVFCSLGIEF* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0243 348 Pfam Ribosomal protein S2 26 121 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo20g0243 348 CDD RPS2 26 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo20g0243 348 TIGRFAM uS2_euk_arch: ribosomal protein uS2 19 214 IPR005707 GO:0003735|GO:0006412|GO:0015935
Amo20g0243 348 ProSitePatterns Ribosomal protein S2 signature 1. 23 34 IPR018130 GO:0003735|GO:0005840|GO:0006412
Amo20g0243 348 PANTHER 40S RIBOSOMAL PROTEIN SA 12 234 IPR005707 GO:0003735|GO:0006412|GO:0015935
Amo20g0243 348 ProSitePatterns Ribosomal protein S2 signature 2. 127 151 IPR018130 GO:0003735|GO:0005840|GO:0006412
Amo20g0243 348 Gene3D - 22 227 - -
Amo20g0243 348 PANTHER 40S RIBOSOMAL PROTEIN SA 12 234 - -
Amo20g0243 348 SUPERFAMILY Ribosomal protein S2 18 208 IPR023591 -
Amo20g0243 348 Hamap 40S ribosomal protein SA [rps-0]. 10 255 IPR027498 GO:0003735|GO:0006412|GO:0015935
Amo20g0243 348 PRINTS Ribosomal protein S2 signature 165 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo20g0243 348 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo20g0243 348 PRINTS Ribosomal protein S2 signature 144 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo20g0243 348 PRINTS Ribosomal protein S2 signature 53 62 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo20g0243 348 PRINTS Ribosomal protein S2 signature 127 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo20g0243 348 PRINTS Ribosomal protein S2 signature 102 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0243 Amo-Chr20 3305704 3308122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0243 5 234 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 83.478 6.74e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0243 K02998 - gmx:100786575 429.869