Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0241 ATGCAGGCATCGGAGAAGAAGCTTGCGAACCCTATGAGGGAAATCAAAGTGCAGAAGCTTGTCCTCAACATCTCCGTCGGCGAGAGCGGCGATCGTCTCACCAGAGCTTCCAAGGTCTTGGAACAGCTCAGCGGCCAAACCCCTGTCTTCTCCAAGGCTAGGTACACTGTGCGTTCATTTGGAATAAGGCGTAATGAAAAGATTGCTTGCTATGTCACCGTTAGGGGAGACAAGGCCATGCAACTTCTTGAGAGTGGGTTGAAGGTCAAGGAGTATGAGCTGCTTAGGAGGAATTTCAGCGATACTGGCTGCTTTGGTTTTGGAATCCAGGAGCACATTGATCTCGGGATCAAGTATGATCCTTCTACTGGGATCTACGGCATGGATTTCTTTGTCGTCTTAGAGCGTGCTGGATACCGTGTGGGTAGGCGGAGGAGACGAAAGTCCCGCGTTGGAATTCAACACAGGGTCACCAAAGAAGATGCAATGAAGTGGTTTCAAGTTAAGTACGAAGGAGTTATTCTTAACAAGTCCCAACAAATTGTATCCTAG 552 0.4873 MQASEKKLANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERAGYRVGRRRRRKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIVS* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0241 183 ProSitePatterns Ribosomal protein L5 signature. 40 56 IPR020929 GO:0003735|GO:0005840|GO:0006412
Amo20g0241 183 Pfam Ribosomal protein L5 10 63 IPR031310 -
Amo20g0241 183 Pfam ribosomal L5P family C-terminus 67 165 IPR031309 -
Amo20g0241 183 Gene3D - 1 178 IPR022803 -
Amo20g0241 183 SUPERFAMILY RL5-like 10 174 IPR022803 -
Amo20g0241 183 PANTHER 60S RIBOSOMAL PROTEIN L11-1 3 182 - -
Amo20g0241 183 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 173 IPR002132 GO:0003735|GO:0005840|GO:0006412
Amo20g0241 183 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 3 182 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0241 Amo-Chr20 3299550 3301003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0241 3 182 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 93.889 1.18e-125 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0241 K02868 - mnt:21404210 329.717