Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0239 ATGGCCATCAACCCATGGTTTCATGTCTCTGTTTTCTTGCTCTCTTTTTATTACACCTTTGCTTTATTATCTACTCTTGGAAAAAGCATCACCAGCACCGATGATGAATCTGCTCTTCTTGCATTCAAATCCTCCATTACTTCAGACCCAAATCACATGCTTGGTAACTGGTCAACCTCTTCATCATCTTCTTTATGCAACTGGGTTGGTGTCATTTGCGATTCGGACAACGGAAGAGTGAAGTCTCTGAATCTTAGTAACATGGGTCTCGTAGGTACCATTCCCCCTCACGTGGGGAACCTCTCTTTCCTTGAGGAGCTTGACCTCAAAGGCAACAACTTTCATGGTATGTTGCCGCAGGAGATGTTTTCTTTGCAACAACTAAGGTTGCTCAACTTGAGTTCCAACGCGTTTGGTGGTTCCATTCCTCAATCTGTGTCCAGCTTGTCCAACTTGGTCGAATTCGATTGTTCATCAAATCTCATCAATGGAACTATTCCACCCGTGATTGGCCAACTTCGCCAATTGAAGCTCTTCAATTTTGAGAATAACTCACTTTCTGGAATTATACCACCAACAGTTTCCAACCTCACTTTGCTTGAAGTATTCAACCTTGGTTCTAACTTCATATCAGGAGAAATTCCAAGAGAGGTGGGTGATCTTACTAAACTAAGGAGAATGAGATTTGATCACAATAAGCTTAGTGGCAAAATTCCAGCAACATTATTCAACATGTCAGTGTTGTATGATTTCATTCTTCACTTCAATGATCTTTCTGGCACTCTTCCATCAAACATTTGTCAAGGCCTTCCCCAACTTTCTTACCTTTATCTCAACGAAAATGATCTCTCTGGTAAGATGCCAACTGTTTGGCATAACTGCCAAGAGTTGATCCATGTTAATCTATCCGTCAATGGTTTCGATAAAGGTCCCATGCCAAGCGATTTCGGGAACTTGACTAAGCTTCAGTATTTATATCTTGATGATAATAACTTGGAAGGTGAGGTTCCATTCTCCCTTTTAAACATCTCTTCTTTGGTGATAATGAGCCTTATGGAGAACAAGTTAAAGGGGCAGCTTCCAAGTGATATGTGTCATTTGCTCCCTCAACTGGAATGTTTGTACCTAGATACCAATCAATTTGAAGGGATCATTCCAAGATCAATTAGCAGATGCACACAACTCAAAGTTTTAAGACTAATGTATAACCAGTTTACAGGTACCATACCAGGTGAGCTTGCTGATCTGAACAATCTTCAGTATCTTATGCTTGGATTTAACAAATTGAGTGGAACTATTCCTCTAAAGCTTCTGAATAGTACAGCTTTGAGATTGTTGTATCTTTCTTACAATTCTCTCTCAGGCACTCTTCCATCAGACAAAGGCTATAACCTTCCTAACCTGGATCAACTGCACTTGACTGGGAACAAATTTGTTGGAACCATTCCAAGTGGTTTATTCAATGCTACTTTGCTCACTAAACTGGACTTGAGTGAGAATCAATTCAGCGGAGTCATGCCAGCTGCGTTTCGAGATCTAACCATACTCGAAGTTCTCCATATAGGTGGCAATAACTTGACAACCGATAATGATTCTCATGAACTCGACTTCCTTACTTCCTTGACAAGTTCTACACATTTGAGAAGGATAATCCTATCTAACAATCCTTTAAATGCAACTCTTCCTAAATCAATTGGAAACTTGTCCCAATCTTTGGTACTCTTTCAAGCAGATAATTGTGGAATCTATGGCAACATTCCAATGGAAGTAGGAAACATAACTAGCCTGTGGAATTTGAATTTATATGGGAATAATATATCTGGACCAATTCCTACTACAATCAAAAGGTTACAGAACCTTCAGTCTTTGAATCTGAGCTACAATGGATTGCAGGGATCCATCATTGATGAGCTTTGTGAAATCATGAGTTTAAGTGTGCTAGCTTTATCAAGCAACAAGCTTTCTGGAGCAATACCAGCATGCTTGGGAAATATGGCTTCTCTTAGAAAGGTTTACATGGATTCTAATAAATTGAACTCGGGGATTCCATCTTCTTTTTGGAATCTCAATGACATCTTAGAGGTGAACCTGTCCTCCAATGCTTTAACTGGACAACTTTCACCAGGGATAGAAAAATTGAGAGCTCTTGTACTATTGGATCTATCAAGAAATGACATTTCAGGTGACATTCCTGCAATAAGTTCACTAGCTCTGCAAAATCTTTCCTTGGCAAGCAACAAGTTGCAAGGTTCCATTCCTGAATCACTTGGTCAGTTGGTAAGCTTAAACTCTTTGGACTTGTCTCAAAATCTTTTGTCTGGTTCCATTCCAAAATCCTTAGTGTCCCTTACTTTTCTTAAATACATCAACTTGTCCTACAATAACTTGCAAGGAGAGATTCCCAGTGGTGGACCTTTTGCCAATTTCACTGCTCAATCTTTCATGCATAATGAAGCACTCTGTGGTAACCCTCGCTTACAAGTCCCTCCATGTGCTAAACAAGATGGCAAAAGTTCAAGGCTAAAACTGATTTTAGCCATTTGCATACCCCTTGTAATAGTGTTAATCATTTTGATTCTTGCATACATAATTGTTCGCCGACATAGAATAAAAGATGTTGAGAATCCAGCTGAAAAGAATTCATCAGACTTGGGAGCAGCAAAAAGGATTTCCTACTATGAACTTGTCCAAGCAACCAATGGATTTAATGAGAGTAACTTAATTGGAAAGGGAGGTTTTGGTTCTGTGTATCAAGGCATGCTCTCTAGTGGGATGATAGTTGCCATTAAAGTGATTAACGTGGACTTGGAAGCAACATCCAAGAGCTTTGATGCAGAATGCAATGCAATGCGCAATTTACGCCATCGAAATCTTGTTAAGGTTATCACTAGTTGCTCAAATGATGAGTTCAAATCTTTGGTGATGGAATTCATGCCAAATGGAAGCCTGGACAAATGGTTGTATTCACATAACTATTGCCTAGATTTCTTGCAAAGGTTGAATATAATGTTGGATGTGGCATCTGCATTGGAATATCTTCATTATGGTTCTTCAATACCAGTTGTTCATTGTGATCTGAAGCCTAGTAATGTCTTACTAGATCAAGAAATGGTTGCACATGTTAGTGACTTTGGCATTGCCAAGCTCTTGGATGAAGGACAATCCATAACACATACTAAGACCATGGCTACACTAGGCTATGTTGCACCAGAATATGGATCTAAAGGAATTATTTCAATCAAAGGAGATGTGTACAGCTATGGAATCATGCTAATGGAAGTATTCACAAGAAAAATGCCAACAGATGATATGTTTGCTGCAGAGTTGAGCTTGAAAAGTTGGATCAACAACTCAATGCCAAATTCAGTGATGGAAGTTGTGGACTCTAATTTAATACAACTATATGGTGATGAAGATATTGATGTTGTATTGCCTCATATATCATCTGTGTTGAGATTAGCTTTGAGTTGTTGTGCAGATTCAGCTGAAGAACGAATTAAAATGACAGATGTGGTTGCAGCATTAACCAAGATCAAGAATGAGTTCACCTTAATGAAAGAATGA 3564 0.3906 MAINPWFHVSVFLLSFYYTFALLSTLGKSITSTDDESALLAFKSSITSDPNHMLGNWSTSSSSSLCNWVGVICDSDNGRVKSLNLSNMGLVGTIPPHVGNLSFLEELDLKGNNFHGMLPQEMFSLQQLRLLNLSSNAFGGSIPQSVSSLSNLVEFDCSSNLINGTIPPVIGQLRQLKLFNFENNSLSGIIPPTVSNLTLLEVFNLGSNFISGEIPREVGDLTKLRRMRFDHNKLSGKIPATLFNMSVLYDFILHFNDLSGTLPSNICQGLPQLSYLYLNENDLSGKMPTVWHNCQELIHVNLSVNGFDKGPMPSDFGNLTKLQYLYLDDNNLEGEVPFSLLNISSLVIMSLMENKLKGQLPSDMCHLLPQLECLYLDTNQFEGIIPRSISRCTQLKVLRLMYNQFTGTIPGELADLNNLQYLMLGFNKLSGTIPLKLLNSTALRLLYLSYNSLSGTLPSDKGYNLPNLDQLHLTGNKFVGTIPSGLFNATLLTKLDLSENQFSGVMPAAFRDLTILEVLHIGGNNLTTDNDSHELDFLTSLTSSTHLRRIILSNNPLNATLPKSIGNLSQSLVLFQADNCGIYGNIPMEVGNITSLWNLNLYGNNISGPIPTTIKRLQNLQSLNLSYNGLQGSIIDELCEIMSLSVLALSSNKLSGAIPACLGNMASLRKVYMDSNKLNSGIPSSFWNLNDILEVNLSSNALTGQLSPGIEKLRALVLLDLSRNDISGDIPAISSLALQNLSLASNKLQGSIPESLGQLVSLNSLDLSQNLLSGSIPKSLVSLTFLKYINLSYNNLQGEIPSGGPFANFTAQSFMHNEALCGNPRLQVPPCAKQDGKSSRLKLILAICIPLVIVLIILILAYIIVRRHRIKDVENPAEKNSSDLGAAKRISYYELVQATNGFNESNLIGKGGFGSVYQGMLSSGMIVAIKVINVDLEATSKSFDAECNAMRNLRHRNLVKVITSCSNDEFKSLVMEFMPNGSLDKWLYSHNYCLDFLQRLNIMLDVASALEYLHYGSSIPVVHCDLKPSNVLLDQEMVAHVSDFGIAKLLDEGQSITHTKTMATLGYVAPEYGSKGIISIKGDVYSYGIMLMEVFTRKMPTDDMFAAELSLKSWINNSMPNSVMEVVDSNLIQLYGDEDIDVVLPHISSVLRLALSCCADSAEERIKMTDVVAALTKIKNEFTLMKE* 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0239 1187 SUPERFAMILY L domain-like 53 386 - -
Amo20g0239 1187 Gene3D Phosphorylase Kinase; domain 1 884 977 - -
Amo20g0239 1187 Gene3D Ribonuclease Inhibitor 32 193 IPR032675 -
Amo20g0239 1187 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 394 1184 - -
Amo20g0239 1187 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 309 410 - -
Amo20g0239 1187 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 170 308 - -
Amo20g0239 1187 Pfam Leucine rich repeat 369 429 IPR001611 GO:0005515
Amo20g0239 1187 Pfam Leucine rich repeat 492 542 IPR001611 GO:0005515
Amo20g0239 1187 Pfam Leucine rich repeat 738 796 IPR001611 GO:0005515
Amo20g0239 1187 SUPERFAMILY L domain-like 313 562 - -
Amo20g0239 1187 SUPERFAMILY L domain-like 576 824 - -
Amo20g0239 1187 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 125 197 - -
Amo20g0239 1187 ProSitePatterns Protein kinases ATP-binding region signature. 908 930 IPR017441 GO:0005524
Amo20g0239 1187 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1021 1033 IPR008271 GO:0004672|GO:0006468
Amo20g0239 1187 PRINTS Leucine-rich repeat signature 492 505 - -
Amo20g0239 1187 PRINTS Leucine-rich repeat signature 617 630 - -
Amo20g0239 1187 SUPERFAMILY Protein kinase-like (PK-like) 885 1175 IPR011009 -
Amo20g0239 1187 ProSiteProfiles Protein kinase domain profile. 902 1183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0239 1187 SMART serkin_6 902 1184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0239 1187 Pfam Protein kinase domain 903 1172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0239 1187 Gene3D Ribonuclease Inhibitor 463 532 IPR032675 -
Amo20g0239 1187 Gene3D Ribonuclease Inhibitor 366 462 IPR032675 -
Amo20g0239 1187 Gene3D Ribonuclease Inhibitor 533 839 IPR032675 -
Amo20g0239 1187 Gene3D Ribonuclease Inhibitor 194 365 IPR032675 -
Amo20g0239 1187 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 15 152 - -
Amo20g0239 1187 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 394 1184 - -
Amo20g0239 1187 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 309 410 - -
Amo20g0239 1187 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Amo20g0239 1187 Gene3D Transferase(Phosphotransferase) domain 1 978 1186 - -
Amo20g0239 1187 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 125 197 - -
Amo20g0239 1187 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 170 308 - -
Amo20g0239 1187 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 15 152 - -
Amo20g0239 1187 SMART LRR_typ_2 490 512 IPR003591 -
Amo20g0239 1187 SMART LRR_typ_2 713 740 IPR003591 -
Amo20g0239 1187 SMART LRR_typ_2 665 688 IPR003591 -
Amo20g0239 1187 SMART LRR_typ_2 368 392 IPR003591 -
Amo20g0239 1187 SMART LRR_typ_2 319 343 IPR003591 -
Amo20g0239 1187 SMART LRR_typ_2 617 641 IPR003591 -
Amo20g0239 1187 SMART LRR_typ_2 270 293 IPR003591 -
Amo20g0239 1187 SMART LRR_typ_2 759 783 IPR003591 -
Amo20g0239 1187 SMART LRR_typ_2 416 440 IPR003591 -
Amo20g0239 1187 SMART LRR_typ_2 101 125 IPR003591 -
Amo20g0239 1187 SMART LRR_typ_2 545 568 IPR003591 -
Amo20g0239 1187 SMART LRR_typ_2 221 245 IPR003591 -
Amo20g0239 1187 SMART LRR_typ_2 465 489 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0239 Amo-Chr20 3286777 3291898 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0239 22 672 Receptor kinase-like Gene Family AT3G47570 32.779 7.23e-77 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo20g0239 Pkinase 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0239 - K13420 gmx:100784397 1159.82