Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0237 ATGGGAATTATTTCTGTCAAAGGAGATGTGTATAGCTATGGAATTATGTTAATGGAAGTCTTCACAAGAAAGATGCCTACAGATGATATGTTTGCTGCAGAATTGAGCTTGAAAAGTTGGATTAACCAATCACTGCCAAATTCAATCATAGAAGTTGTGGATTACAATTTAGTACAATTATATGGTGAACAAATTGATAATATATTGCCCCATATATCATCTATATTAGAATTAGCTTTGAGTTGTTGTGTAAATCCACCTGAAGAACGAATTACAGTGACAGATGTTGTTGTGTCATTAACCAAGATCAAGAATTTGTTCACACAAGAAAGCTAA 336 0.3274 MGIISVKGDVYSYGIMLMEVFTRKMPTDDMFAAELSLKSWINQSLPNSIIEVVDYNLVQLYGEQIDNILPHISSILELALSCCVNPPEERITVTDVVVSLTKIKNLFTQES* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0237 111 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 108 - -
Amo20g0237 111 SUPERFAMILY Protein kinase-like (PK-like) 3 100 IPR011009 -
Amo20g0237 111 Gene3D Transferase(Phosphotransferase) domain 1 1 105 - -
Amo20g0237 111 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0237 Amo-Chr20 3282082 3282417 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0237 2 111 Receptor kinase-like Gene Family AT3G47570 32.727 3.31e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo20g0237 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0237 - K13420 mtr:MTR_8g469860 154.066