Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0236 ATGGATCAAGCCGCAAGTGAGGGGAGTGGTGAGGTAATGGATCCTGTTCATGAAAGAGTTGATGATAATTTGAGTCATGAACCTGATGGGGCTGCAATTGATGCAGTAGGTAGGGGTAGCTTGGGTGAGAGAACCACTATAAGTGGAGAAGTTGGAACTTCAGAACAAAAGGGTAAGGATTTGGGATCAGATAAGGAGTTAAAGGTGGAACCTGAGGAAGTTGAGAGTGGGAAGAAGTGTGATTACCAAAAAAACAGTGAAACAATGTCTGAGGTTGATCAAGGAACTAGTTATAATTCAAGCAATTTGGTTAATCAGCAAGTGGTTGAAACCGTGGTTGTAATAGAGGCTGTTCAGAGTGAGTGTGTTAACAGGGACAGTATGAAATTGGAGCTGAAGGTAAATGAATCAGGGTTGAGCAAAGTATCTGTGAGAGCCCCCAAAGGGGTTTCTGAAATGACAGATAAGAATTCTTGTGTGATTGATATAAGGTGCACCAACCACAAACGGTTTAGTGAGAGTTCAGAAGGTGAAAGGATTTGTAGGATTTGCCACCTTGCTTCTGGGAGACCATCAGATGCAACAGCTGTTGGAACTGCCAATGGTGCTACTAGTACTGATTTGATTCAGCTTGGTTGTTCATGTAAGGATGAGCTTGGCATTGCGCATATTCATTGTGCTGAGGCCTGGTTCAAGCTTAAAGGAAACAGAATAAATTGCTTATTAGCTACTCTTTCTAACAACAGATTATGTGAAATATGTGGCGAGATTGCGAAAAACGTGTCGGGTGTTGCTGATGCTGGATTCATGGAAGAGTGGAACGAAGGGAGATTCATGGACCAAGATAACTCATCACGCAGGTTTGGTGGATGTTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTTGTAATTGCTTTTGTTCTTCCATGGTTTTTTCGTGTAAATATGTTCTAG 963 0.4247 MDQAASEGSGEVMDPVHERVDDNLSHEPDGAAIDAVGRGSLGERTTISGEVGTSEQKGKDLGSDKELKVEPEEVESGKKCDYQKNSETMSEVDQGTSYNSSNLVNQQVVETVVVIEAVQSECVNRDSMKLELKVNESGLSKVSVRAPKGVSEMTDKNSCVIDIRCTNHKRFSESSEGERICRICHLASGRPSDATAVGTANGATSTDLIQLGCSCKDELGIAHIHCAEAWFKLKGNRINCLLATLSNNRLCEICGEIAKNVSGVADAGFMEEWNEGRFMDQDNSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0236 320 MobiDBLite consensus disorder prediction 57 86 - -
Amo20g0236 320 PANTHER ZINC FINGER, RING-CH-TYPE 1 320 - -
Amo20g0236 320 SUPERFAMILY RING/U-box 176 256 - -
Amo20g0236 320 MobiDBLite consensus disorder prediction 12 28 - -
Amo20g0236 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 265 IPR013083 -
Amo20g0236 320 SMART ringv_2 180 255 IPR011016 GO:0008270
Amo20g0236 320 ProSiteProfiles Zinc finger RING-CH-type profile. 173 261 IPR011016 GO:0008270
Amo20g0236 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 320 - -
Amo20g0236 320 MobiDBLite consensus disorder prediction 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0236 Amo-Chr20 3279640 3282438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0236 161 319 C3H Transcription Factor Family AT5G05830 37.725 3.45e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0236 - - gmx:100791720 387.497